Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0961
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160...    29   2.4  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    29   2.4  
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808...    29   2.4  
02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139           28   7.4  
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084...    27   9.7  

>11_08_0011 +
           27612206-27615110,27615211-27615538,27615989-27616059,
           27616962-27617118,27617676-27617709
          Length = 1164

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 413 PKLCGVIRETFKMSQRKRKQINIEEKSRIMQIYFSNNSLPICLYL 279
           P LCGV R  F + Q   K+     K  ++ I+ S   +  CLY+
Sbjct: 718 PGLCGVARLGFSLCQTSHKRNGQMLKYLLLAIFISVGVVACCLYV 762


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 515 VFLILRNKTRACGSQSPLLHISAVSLLLIYTQDAPKLCGVIRETFKMSQRKRK 357
           +FL L +   +    + LL  S   LL + T++ P LCG  +    ++Q KRK
Sbjct: 463 IFLDLSSNNFSGSIPTNLLQKSQEGLLTLRTENNPNLCGTDKCDLILNQSKRK 515


>03_02_0394 -
           8081172-8081330,8082015-8082134,8082223-8082271,
           8083193-8083371,8083583-8083852,8084480-8084631,
           8085694-8085715,8086314-8086430
          Length = 355

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 443 SLLLIYTQDAPK--LCGVIRETFKMSQRKRKQINIEEKSRIMQIY 315
           +LL + T+  P+  L GVIRE    SQ +RK I +EE   +   Y
Sbjct: 133 TLLALATECGPQSLLAGVIRERKGSSQAERKGIEVEETGLLYAPY 177


>02_02_0018 - 6143333-6143689,6143897-6143943,6144025-6144139
          Length = 172

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 47  VLCRMETIEFRFKLCASGSQPPCRKPL 127
           +LCR   +  R  +CA+    PCR P+
Sbjct: 134 LLCRPRLLHLRADVCAAALASPCRPPV 160


>07_03_0741 -
           21107566-21107838,21107964-21108102,21108189-21108426,
           21108629-21108836,21108945-21109066,21109146-21109271,
           21109356-21109774,21109844-21110268
          Length = 649

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 628 CYNDRLSCIVNNLNRYPHLSSMAFKIRKENNRI 530
           C +  L C+  + +  PH+SS+ F + KEN ++
Sbjct: 588 CIHIGLLCVQPDPDDRPHMSSIIFMLTKENMKL 620


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,674,033
Number of Sequences: 37544
Number of extensions: 293148
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)