Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0961
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)                      27   9.9  
SB_14327| Best HMM Match : NHL (HMM E-Value=0)                         27   9.9  

>SB_32908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 467 PLLHISAVSLLLIYTQDAPKLCGVIRETFKMSQRKRKQI 351
           P  H++ VSL LIY  +A    G IR    ++Q K + I
Sbjct: 310 PAEHMAQVSLALIYAAEAYHTRGAIRHIVGVTQMKNQDI 348


>SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -3

Query: 442 VCYLSIHKTHQN--FVELFVKLSKCXXXXXXXXXXXXXRVLCKYIFPIIPYRFV-CTCTI 272
           +C + ++ TH    F++++V  + C                C +  P+    +V CTCT 
Sbjct: 807 LCTVHVYCTHGPPLFMDVYVPCTYCTHGPPLFMDVYVQCTYCTHGTPLFMDVYVQCTCTA 866

Query: 271 HIKH 260
           H++H
Sbjct: 867 HMEH 870


>SB_8116| Best HMM Match : FIVAR (HMM E-Value=8.6)
          Length = 127

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 197 YSQNLL*RHRR--DCSYSVVKTVMFNVYRASTNKSVGNYWKNI 319
           Y Q     H++  D +Y+ +KT +      +TNK +GN + NI
Sbjct: 9   YQQRQQQHHQQPIDDNYNNIKTTITATMTTTTNKVIGNNYSNI 51


>SB_14327| Best HMM Match : NHL (HMM E-Value=0)
          Length = 725

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 431 IYTQDAPKLCGVIRETFK--MSQRKRKQINIEEKSRIMQIYFSN 306
           +Y +D        RE F   ++Q ++K+ N+EEK  +++ +F N
Sbjct: 189 VYYKDHKPASPQTRERFNKILTQVEKKKKNLEEKMELLETHFEN 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,428,988
Number of Sequences: 59808
Number of extensions: 383224
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)