Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0961
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonse...    31   2.7  
BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonse...    31   2.7  
AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein.                31   2.7  
AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonse...    31   2.7  
AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonse...    31   2.7  
AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein.                 31   2.7  
AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense t...    31   2.7  
AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein.     31   2.7  

>BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonsense
           transcripts homolog (yeast) protein.
          Length = 1272

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 416 APKLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           A  LC ++R  F+   RK+ QINIE K++ ++
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTVR 668


>BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonsense
           transcripts homolog (yeast) protein.
          Length = 1272

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 416 APKLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           A  LC ++R  F+   RK+ QINIE K++ ++
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTVR 668


>AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein.
          Length = 1272

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 416 APKLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           A  LC ++R  F+   RK+ QINIE K++ ++
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTVR 668


>AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonsense
           transcripts homolog (yeast) protein.
          Length = 1272

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 416 APKLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           A  LC ++R  F+   RK+ QINIE K++ ++
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTVR 668


>AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonsense
           transcripts homolog (yeast) protein.
          Length = 1272

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 416 APKLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           A  LC ++R  F+   RK+ QINIE K++ ++
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTVR 668


>AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein.
          Length = 1272

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 416 APKLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           A  LC ++R  F+   RK+ QINIE K++ ++
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTVR 668


>AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense
           transcripts 2 protein.
          Length = 1272

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 416 APKLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           A  LC ++R  F+   RK+ QINIE K++ ++
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTVR 668


>AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein.
          Length = 1298

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 416 APKLCGVIRETFKMSQRKRKQINIEEKSRIMQ 321
           A  LC ++R  F+   RK+ QINIE K++ ++
Sbjct: 663 AEDLCSMLRGDFRFHVRKKDQINIETKNKTVR 694


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,898,112
Number of Sequences: 237096
Number of extensions: 1727950
Number of successful extensions: 2525
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)