Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0961
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy...    28   6.6  
AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in ...    28   6.6  
AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in ...    28   6.6  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    28   6.6  
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ...    28   6.6  

>U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical
           protein F18G5.4 protein.
          Length = 615

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 500 RNKTRACGSQSPLLHISAVSLLLIYTQDAPKLCG-VIRETF 381
           +N  R C    PL+HI A S++     D   + G  IRE F
Sbjct: 484 QNANRECECMDPLVHIYAESIMSCLAADTKPMNGSTIREDF 524


>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
           cytoplasmic polyA polymeraseprotein.
          Length = 1113

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 257 PFLRLNMSSPFDAVITDFDCTKKIVYTN 174
           P LR+N ++PFD +  D +    +   N
Sbjct: 652 PILRINFAAPFDDITVDLNANNSVAIRN 679


>AF024497-5|AAO21477.1|  871|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform b protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 257 PFLRLNMSSPFDAVITDFDCTKKIVYTN 174
           P LR+N ++PFD +  D +    +   N
Sbjct: 410 PILRINFAAPFDDITVDLNANNSVAIRN 437


>AF024497-4|AAO21479.1|  807|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform d protein.
          Length = 807

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 257 PFLRLNMSSPFDAVITDFDCTKKIVYTN 174
           P LR+N ++PFD +  D +    +   N
Sbjct: 346 PILRINFAAPFDDITVDLNANNSVAIRN 373


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 257 PFLRLNMSSPFDAVITDFDCTKKIVYTN 174
           P LR+N ++PFD +  D +    +   N
Sbjct: 575 PILRINFAAPFDDITVDLNANNSVAIRN 602


>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
           germ line developmentprotein 2, isoform a protein.
          Length = 1113

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 257 PFLRLNMSSPFDAVITDFDCTKKIVYTN 174
           P LR+N ++PFD +  D +    +   N
Sbjct: 652 PILRINFAAPFDDITVDLNANNSVAIRN 679


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,689,892
Number of Sequences: 27780
Number of extensions: 307963
Number of successful extensions: 732
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)