Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0961
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07590.1 68418.m00870 WD-40 repeat protein family contains 3 ...    29   3.5  
At3g22100.1 68416.m02788 basic helix-loop-helix (bHLH) family pr...    27   8.1  

>At5g07590.1 68418.m00870 WD-40 repeat protein family contains 3
           WD-40 repeats (PF00400); similarity to WD-repeat protein
           8 (WDR8)(SP:Q9P2S5] [HOMO SAPIENS]
          Length = 458

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 308 NNSLPICLYLHDTH*TSPFLRLNMSSPFDAVITDFDCTKKIVYTNVSHI 162
           N+S+P  L++ D         L    P  A + D  CT+ ++ T  SH+
Sbjct: 352 NDSMPTALWIWDMRLLEVAAILVQKEPIRAAVWDPTCTRLLLCTGSSHL 400


>At3g22100.1 68416.m02788 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 252

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 578 WIPIQIVYNTA*PVVVTDLI 637
           W+P++ VYNTA  V  TDL+
Sbjct: 188 WMPLESVYNTAGEVGETDLL 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,463,166
Number of Sequences: 28952
Number of extensions: 268386
Number of successful extensions: 529
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)