Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0960
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 29 0.44
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.58
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 27 1.3
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 2.3
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 26 3.1
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 26 4.1
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p... 25 5.4
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 7.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 7.2
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 9.5
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.5
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 29.1 bits (62), Expect = 0.44
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 161 YISMVSLCLCPVNILFTAPSLRHKLHTPSSGNISTIISESMF 36
Y ++ LC+ + ++ A S R HTP SG+I + + F
Sbjct: 275 YAYLLPLCVFVIPLIILAVSKRFYKHTPPSGSIFVRVGQVFF 316
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.58
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 406 SXISLATTSPSASVLRSSKAPCDSTFSNLNVSS 308
S +S +T+SPS++ L S + STFS+ + SS
Sbjct: 578 SILSSSTSSPSSTSLSISSSSTSSTFSSASTSS 610
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Frame = -3
Query: 221 VSPSSTAVMSMEK--HFNNISEYISMVSLCLCPVNILFTAPSL 99
VS SS ++ S + ++++S+ +S++S CP+ TAPS+
Sbjct: 65 VSSSSWSLSSSDSIMSYDSLSDDVSVLSFLDCPLTTFETAPSI 107
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 136 KHNDTMEIYSDMLLKCFSIDITAVELGDTKRLICMTCISSCE 261
K ND + Y D +L D LG R I +TC+S C+
Sbjct: 302 KKNDVLIPYKDSVLTTLLQDA----LGGNCRTIMLTCVSPCD 339
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -3
Query: 287 NLNPESDAVSQLDMQVMHINLLVSPSSTAVMSMEKHFNNISEYISMVSL 141
NLN +S+L +V +LL+ S ++ + FN+++ I +V +
Sbjct: 384 NLNMIGSKISELRKEVFDTDLLIQASIDSLEKKVQKFNSLAYRIGIVPI 432
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = -3
Query: 263 VSQLDMQVMHINLLVSPSSTAVMSMEKHFNNISEYISMVSLCLCPVNILFTAPSLRHKL 87
++QL + + + ++A+ M + S++ +C+CP N+L ++ S + L
Sbjct: 351 LAQLGVNIAANTVSAGNDTSALCPMFINIRRGGYIASIIGICMCPWNLLSSSNSFANSL 409
>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 208
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +2
Query: 119 VC*PDTNIMTPWKY 160
+C PDTN T WKY
Sbjct: 46 ICQPDTNNPTRWKY 59
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 397 SLATTSPSASVLRSSKAPCDSTF 329
+ + T+ S LRS ++PC +TF
Sbjct: 35 NFSITNKSLETLRSQESPCSTTF 57
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -1
Query: 406 SXISLATTSPSASVLRSSKAPCDSTFSNLNVSSRVYKEAST*TLKATQSRNS 251
S + TTSPS+S SS + S+ S+ + SS +S+ + ++ S +S
Sbjct: 146 SSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 197
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 91 NCTRPVAVTSPPLSRNP 41
N P A TS P+SRNP
Sbjct: 130 NTDSPSATTSSPISRNP 146
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 330 NVESHGALDDLKTXALGDVVANEIXDY 410
N E + +L+ LKT GD + +E D+
Sbjct: 52 NEEEYPSLESLKTVGNGDTIQDEEEDF 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,082
Number of Sequences: 5004
Number of extensions: 36851
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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