Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0960
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8941| Best HMM Match : VWA (HMM E-Value=0)                          29   3.2  
SB_36539| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        27   9.7  
SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)           27   9.7  

>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2180

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 112  VKSMLTGHKHNDTMEIYSDMLLKCFSIDITAVELGDTKR 228
            + S+LT  +H  T  +YSD++ K  SI      +GD  R
Sbjct: 1925 IASLLTRKRHQYTAPLYSDLVTKVGSISRDLCLIGDYPR 1963


>SB_36539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
 Frame = -3

Query: 131 PVNILFTAPSLRHKLHTPS-SGNISTI-----ISESMFAYSTTVQAL 9
           P+++LF   +++HKL  P+ S N S +     I +S+F  S  V+ L
Sbjct: 16  PIDVLFVDKTIKHKLDNPAKSDNKSPVKILQGIKKSLFVLSGVVRFL 62


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 136 KHNDTMEIYSDMLLKCFSIDITAVELGDTKRLICMTCISSC 258
           K  D++E  SD+L     ++   +E  D  R I  TCIS C
Sbjct: 263 KFLDSLEASSDILDTSSLVESALLERCDGNRNILHTCISMC 303


>SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)
          Length = 500

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 136 KHNDTMEIYSDMLLKCFSIDITAVELGDTKRLICMTCISSC 258
           K  D++E  SD+L     ++   +E  D  R I  TCIS C
Sbjct: 370 KFLDSLEASSDILDTSSLVESALLERCDGNRNILHTCISMC 410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,945,469
Number of Sequences: 59808
Number of extensions: 284346
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)