Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0960
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subun...    29   1.5  
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa...    29   1.5  
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains...    29   2.0  
At5g33280.1 68418.m03944 chloride channel-like (CLC) protein, pu...    28   3.4  
At2g16960.1 68415.m01954 importin beta-2 subunit family protein ...    28   4.5  
At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase, pu...    28   4.5  
At5g18420.3 68418.m02170 expressed protein non-consensus GC dono...    27   6.0  
At5g18420.2 68418.m02169 expressed protein non-consensus GC dono...    27   6.0  
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono...    27   6.0  
At5g41730.1 68418.m05074 protein kinase family protein contains ...    27   7.9  
At3g48820.2 68416.m05332 glycosyl transferase family 29 protein ...    27   7.9  
At3g48820.1 68416.m05331 glycosyl transferase family 29 protein ...    27   7.9  
At3g12590.1 68416.m01568 expressed protein                             27   7.9  
At3g01760.1 68416.m00114 lysine and histidine specific transport...    27   7.9  

>At2g40030.1 68415.m04919 DNA-directed RNA polymerase alpha subunit
           family protein contains InterPro accession IPR000722:
           RNA polymerase, alpha subunit
          Length = 888

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = -3

Query: 293 GFNLNPESDAVSQLDMQVMHINLLVSPSSTAVMSMEKHF-NNISEYISMVSLCLCPVNIL 117
           GF+L+ E  ++S+ DM V+H NL++   S  V  +   + + +    S+  +     N +
Sbjct: 567 GFSLSLEDLSMSRADMDVIH-NLIIREISPMVSRLRLSYRDELQLENSIHKVKEVAANFM 625

Query: 116 FTAPSLRHKLHTPSSGNISTIISESMF 36
             + S+R+ +   S+  I+ ++ ++ F
Sbjct: 626 LKSYSIRNLIDIKSNSAITKLVQQTGF 652


>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type
          Length = 467

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 181 CFSIDITAVELGDTKRLICMTCISSCETASL 273
           CF  DI+ V L    R++C TC   C T  +
Sbjct: 423 CFEKDISLVLLPCRHRVLCRTCADKCTTCPI 453


>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 470

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 290 FNLNPESDAVSQLDMQVMHINLLVSPSSTAVMSMEKHFNNISEYISMVSLC 138
           F LNP+ + V +L  +  H  L+++     V S  K  NN  + + M S C
Sbjct: 144 FKLNPDRECV-ELSFEKKHTELVLNSYIPYVESKAKVINNERKILKMYSYC 193


>At5g33280.1 68418.m03944 chloride channel-like (CLC) protein,
           putative similar to CLC-c, At5g49890 [Arabidopsis
           thaliana] and chloride channel protein ClC-1 - Nicotiana
           tabacum, PIR:T02939
          Length = 763

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 197 MSMEKH-FNNISEYISMVSLCLCPVNILFTAPSLRHKLHTPSSGNISTII 51
           M ++ H F+N S Y  + ++ L    ILF    +RH L  P + N   ++
Sbjct: 678 MYLDLHPFSNASPYTVVETMSLAKALILFREVGIRHLLVIPKTSNRPPVV 727


>At2g16960.1 68415.m01954 importin beta-2 subunit family protein
           contains weak hit to Pfam PF02985: HEAT repeat (4
           copies); contains weak hit to Pfam PF03130: PBS lyase
           HEAT-like repeat (2 copies); supported by tandem
           duplication of importin beta family protein
           (TIGR_Ath1:At2g16950) [Arabidopsis thaliana]; similar to
           Importin beta-2 subunit (Karyopherin beta-2 subunit)
           (Transportin) (M9 region interaction protein) (MIP)
           (Swiss-Prot:Q92973) [Homo sapiens]
          Length = 547

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 82  VCSLCLNDGAVKSMLTGHKHNDTMEIYSDMLLKCFSIDITAVELGDTKRLIC 237
           VCSL    G  K +++G +   +     DMLLKCF +D T         LIC
Sbjct: 286 VCSLEFFSGLSKGLVSGIESLVSQSNLRDMLLKCF-MDETPDVRESAFALIC 336


>At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase,
           putative / G6PD, putative similar to SP|Q43839
           Glucose-6-phosphate 1-dehydrogenase, chloroplast
           precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
           contains Pfam profiles PF02781: Glucose-6-phosphate
           dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
           dehydrogenase NAD binding domain; gc exon splice site at
           20574 is based on protein alignment, and is not
           confirmed experimentally
          Length = 625

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 397 SLATTSPSASVLRSSKAPCDSTFSNLNVSSRVYKEAST*TLKATQSRNSICR 242
           S + T+PS+SV     A   ++FSN  VSSR Y  + + +L      +++CR
Sbjct: 11  SQSATAPSSSVCSCHLA---ASFSNFPVSSRDYSFSRSGSLVLNGGGSNLCR 59


>At5g18420.3 68418.m02170 expressed protein non-consensus GC donor
           splice site at exon 1, unknown (C40) protein, Homo
           sapiens, EMBL:AF103798
          Length = 439

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +1

Query: 142 NDTMEIYSDMLLKCFSIDI-----TAVELG-DTKRLICMTCISSCETA 267
           ND  E   +M +   S+++     TAVEL  D  R+    CISSCE A
Sbjct: 330 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENA 377


>At5g18420.2 68418.m02169 expressed protein non-consensus GC donor
           splice site at exon 1, unknown (C40) protein, Homo
           sapiens, EMBL:AF103798
          Length = 442

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +1

Query: 142 NDTMEIYSDMLLKCFSIDI-----TAVELG-DTKRLICMTCISSCETA 267
           ND  E   +M +   S+++     TAVEL  D  R+    CISSCE A
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENA 380


>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
           splice site at exon 1, unknown (C40) protein, Homo
           sapiens, EMBL:AF103798
          Length = 441

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +1

Query: 142 NDTMEIYSDMLLKCFSIDI-----TAVELG-DTKRLICMTCISSCETA 267
           ND  E   +M +   S+++     TAVEL  D  R+    CISSCE A
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENA 380


>At5g41730.1 68418.m05074 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 711

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 400 ISLATTSPSASVLRSSKAPCDSTFSNLNVSSRVYKEA 290
           +S+    P+A + R +K+ C  T S  + +  VY EA
Sbjct: 587 VSVVEDPPNAMITRDTKSLCLDTISEYSDTRSVYSEA 623


>At3g48820.2 68416.m05332 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 431

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 247 ISSCETASLSGFKLKPPYTLWRIHLS*RM*NHTAL 351
           +S+C++  + GF + P Y  W  + S     HT L
Sbjct: 283 LSTCDSVDMYGFTVDPGYKEWTRYFSESRQGHTPL 317


>At3g48820.1 68416.m05331 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 440

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 247 ISSCETASLSGFKLKPPYTLWRIHLS*RM*NHTAL 351
           +S+C++  + GF + P Y  W  + S     HT L
Sbjct: 292 LSTCDSVDMYGFTVDPGYKEWTRYFSESRQGHTPL 326


>At3g12590.1 68416.m01568 expressed protein
          Length = 1162

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 202  AVELGDTKRLICMTCISSCETASLSGFKLK 291
            +V+ GDTK       +S+CETAS++   L+
Sbjct: 983  SVDEGDTKPRYNNVSVSTCETASMAAMLLR 1012


>At3g01760.1 68416.m00114 lysine and histidine specific transporter,
           putative similar to lysine and histidine specific
           transporter [Arabidopsis thaliana] GI:2576361; contains
           Pfam profile PF01490: Transmembrane amino acid
           transporter protein
          Length = 479

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
 Frame = -3

Query: 317 CILQSV*GGFNLNPESD-AVSQLD----MQVMHINLLVSPSSTAVMSMEKHFNNISEYIS 153
           CI+  V GG +L    D A+   D    +++ H  +L+  SS  V+S+ K+FN+IS  +S
Sbjct: 153 CIVYMVTGGKSLKNVHDLALGDGDKCTKLRIQHF-ILIFASSQFVLSLLKNFNSISG-VS 210

Query: 152 MVS 144
           +V+
Sbjct: 211 LVA 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,331,975
Number of Sequences: 28952
Number of extensions: 190847
Number of successful extensions: 448
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)