Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0956
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    29   0.39 
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   2.1  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   4.8  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    25   8.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   8.4  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   8.4  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    25   8.4  

>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 38  VQTTVKKIHAYSHHLFALRTL 100
           ++  VKKIH ++H +F LRTL
Sbjct: 63  LKVAVKKIHPFNHPVFCLRTL 83


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
 Frame = +2

Query: 17  RTVLWYVVQTTV-----KKIHAYSHHLFAL 91
           R + WY + TT+     + I+AY HHLF +
Sbjct: 109 RFINWYFLMTTLYYAYGESIYAYFHHLFIM 138


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 67  IQPPLVCPKNTEHRARXAGKCACCPACVTLLGEG 168
           + PPL  PK+  HR   AG+       + LL +G
Sbjct: 334 LDPPLD-PKSFSHRCGRAGRAGRAGVAIVLLNDG 366


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 214  RRGFRLVPSNKSCKLHLHQVKLHKRDNKHTFQRXWRD 104
            +R  +L   N   KLH  ++    R+ +HT Q+ + D
Sbjct: 915  KRVRKLEKVNSELKLHCFELSERLREREHTLQQTFGD 951


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 110 ARCSVFLGQTSGGCMHGFFSQ*SVPHTKAPY 18
           ARC  F+ Q SGG + GF  +  + + K  Y
Sbjct: 161 ARCFDFVLQKSGGNILGFLGKARILYAKGNY 191


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 149 TQAGQQAHFPAXLARCSVFLGQTS 78
           T AGQ AH    L R S+++G  S
Sbjct: 143 TNAGQIAHLSLELMRISIWIGNYS 166


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = +3

Query: 318 PVRNIICVRNKIDN 359
           P+R+IIC RN+++N
Sbjct: 160 PLRSIICGRNRLEN 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,605
Number of Sequences: 5004
Number of extensions: 37983
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)