Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0956
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ...    29   1.7  
At5g11620.1 68418.m01359 SWIM zinc finger family protein / mitog...    28   3.0  
At2g31440.1 68415.m03841 expressed protein identical to cDNA end...    28   4.0  
At5g03700.1 68418.m00330 PAN domain-containing protein contains ...    27   9.3  
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ...    27   9.3  

>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
           family protein low similarity to Ser/Thr protein kinase
           [Zea mays] GI:2598067; contains Pfam profile PF01453:
           Lectin (probable mannose binding)
          Length = 443

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 121 GKCACCPACVTLLGEGATCKIYS 189
           G+C  CP+ + LLG   TCKI S
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPS 352


>At5g11620.1 68418.m01359 SWIM zinc finger family protein /
           mitogen-activated protein kinase kinase kinase
           (MAPKKK)-related contains weak similarity to
           Swiss-Prot:P53349 mitogen-activated protein kinase
           kinase kinase 1 (MAPK/ERK kinase kinase 1, MEK kinase 1,
           MEKK 1) [Mus musculus]; contains Pfam profile PF04434:
           SWIM zinc finger
          Length = 273

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 166 GATCKIYSKELGETPSAVCKEPLKCIKRV 252
           GATC +Y+  L  TP+  C +  K  K +
Sbjct: 53  GATCNVYTVTLMATPTCTCPDRKKPCKHI 81


>At2g31440.1 68415.m03841 expressed protein identical to cDNA
           endonuclease III homologue (nth1 gene) GI:11181951
          Length = 250

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 93  LRANKWWLYAWIFFTVVC 40
           L+AN WW YA +  T VC
Sbjct: 59  LKANVWWPYALLVITSVC 76


>At5g03700.1 68418.m00330 PAN domain-containing protein contains
           Pfam profile: PF00024 PAN domain
          Length = 482

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 252 NSFDAFERLLTHSGGGFA-*FLRIN 181
           +S D+F+ LLT S G F+  FLR+N
Sbjct: 48  SSIDSFQPLLTDSNGNFSFGFLRVN 72


>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
           similarity to cysteine protease SPCP1 GI:13491750 from
           [Ipomoea batatas]
          Length = 334

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = -1

Query: 229 APYTQRRGFRLVPSN 185
           AP+TQ RGF++VPS+
Sbjct: 220 APHTQIRGFQMVPSH 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,407,671
Number of Sequences: 28952
Number of extensions: 193673
Number of successful extensions: 423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)