Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0955
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.68 
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   0.90 
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    27   2.1  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   4.8  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    26   4.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   6.3  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.4  

>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -1

Query: 394 YPKLVXRIVDLFKSAAETFHKDKXPNFLREILQKNTENIYQEVKYKQERRSFYIIKYRK 218
           +PK+  +I  L    AE   + K PN L  I +   E +    +  QE    Y  + RK
Sbjct: 49  FPKVERKIQSLLDELAEVLFQSKQPNDLTRIRKAIAEQLQLWCQACQENADLYRSQQRK 107


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 274 QEVKYKQERRSFYIIKYRKFNLTSFGIIIITAIGAELQNEGKDNLF 137
           + VK K+ERR     K R+      G++    IG E +  G+D+LF
Sbjct: 365 ERVKLKRERRKANQRKQREIVRMQMGMLAPMDIGLEHEAMGEDSLF 410


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/72 (22%), Positives = 30/72 (41%)
 Frame = -1

Query: 313  LREILQKNTENIYQEVKYKQERRSFYIIKYRKFNLTSFGIIIITAIGAELQNEGKDNLFF 134
            LR +  KN ENI    K++       + K RK+       + +   G +     ++ +  
Sbjct: 935  LRALRHKNPENIPLLEKWEVRALHQLMAKIRKYYTVPTDYLSLRMDGLQAMLRKREYMSC 994

Query: 133  FFYKMIKYACIM 98
            + +    YAC+M
Sbjct: 995  YTFNYFDYACLM 1006


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 7   NNLFKKSVDYFTKYCK 54
           N  FKKS+ +F  YCK
Sbjct: 66  NTFFKKSIFFFVYYCK 81


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 351 LQKHFIRIKXLIS*EKFCRKIRKIYIRKLNINKKD 247
           L K + RIK LI+ E+FC   + + ++KL  + KD
Sbjct: 19  LDKRYKRIKRLINNEQFC---KNVILQKLVDSTKD 50


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 328 KXPNFLREILQKNTENIYQEVKYKQERRSFYIIKYRKF 215
           K P  +  +L+++T+     +K + E+ SFY +  R+F
Sbjct: 162 KGPVVIEGLLRQHTDKPRFMMKNEPEKNSFYFLNVREF 199


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
 Frame = -1

Query: 532  KLGLILNKFSLYQHNVA--AEVCKPLRLDTSLCIQXPFDHSRNCSVNIYPKLVXRIVDLF 359
            KLG I  ++ L + + A   E  +PL +D +  I     HS     +I  KL    ++ F
Sbjct: 1550 KLGSIFYQY-LRKDSFAELTERLQPLYVDAATAIANTGAHSAYDCYDILSKL--HAINDF 1606

Query: 358  KSAAETFHKDKXPNFLREILQKNTENIYQEVKYKQERRSFYIIKYRKFNLT 206
               AET       + L  +L++    +    K+K +  S +++ Y KF  T
Sbjct: 1607 SRIAET--DGIVSDNLDIVLRRRLSQVAPYGKFKHQILSTHLVGYEKFENT 1655


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 47  TVNRTHIGDNELNFRFNHNTSVFNHFVEK-KKQIIFSLVLQFCPYCGYND 193
           T N THI D+ L F   H++   +  VEK   + I  L   F  YC   D
Sbjct: 210 TKNYTHIFDSLLTFT-RHDSEDVSTSVEKLTSKKISELEKLFADYCSIED 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,717
Number of Sequences: 5004
Number of extensions: 46707
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)