Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0955
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35437| Best HMM Match : DUF1212 (HMM E-Value=1.5)                   30   1.6  
SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24)                 27   8.7  
SB_9291| Best HMM Match : ALF (HMM E-Value=6.9)                        27   8.7  
SB_46506| Best HMM Match : DUF827 (HMM E-Value=6.9)                    27   8.7  

>SB_35437| Best HMM Match : DUF1212 (HMM E-Value=1.5)
          Length = 184

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = -1

Query: 334 KDKXPNFLREILQKNTENIYQEVKYKQERRSFYIIKYRKFNLTSFGIIIITAIGAELQNE 155
           +++    L EI +  +EN   E +     R   I K   F +T+FG+ + TAI A + + 
Sbjct: 62  RERNEERLSEIDELKSENRELENQKPLRERIKAIFKKYGFTVTAFGLAVATAIAAIVTSL 121

Query: 154 GK 149
           GK
Sbjct: 122 GK 123


>SB_41296| Best HMM Match : RVT_1 (HMM E-Value=2.8e-24)
          Length = 568

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 71  DNELNFRFNHNTSVFNHFVEKKKQI-IFSLVLQFCPYCGYNDYSER 205
           D++ N   +  ++V NHF+EK   +  FS+ L+  PY  + D S R
Sbjct: 99  DSDCNVLCDQYSTVLNHFIEKHAPVRTFSVTLR--PYSPWYDDSLR 142


>SB_9291| Best HMM Match : ALF (HMM E-Value=6.9)
          Length = 408

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 370 VDLFKSAAETFHKDKXPNFLREILQKNTEN 281
           +D+F S  +   +   PN +REIL  + EN
Sbjct: 306 IDIFNSTGQFLREVNVPNVVREILVSDIEN 335


>SB_46506| Best HMM Match : DUF827 (HMM E-Value=6.9)
          Length = 261

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 370 VDLFKSAAETFHKDKXPNFLREILQKNTEN 281
           +D+F S  +   +   PN +REIL  + EN
Sbjct: 64  IDIFNSTGQFLREVNVPNVVREILVSDIEN 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,035
Number of Sequences: 59808
Number of extensions: 299342
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)