Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0955
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30990.1 68417.m04398 expressed protein ; expression supporte...    29   2.4  
At1g27020.1 68414.m03294 expressed protein                             29   3.1  
At2g26620.1 68415.m03194 glycoside hydrolase family 28 protein /...    28   4.1  
At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma m...    27   7.2  
At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger) fa...    27   9.5  

>At4g30990.1 68417.m04398 expressed protein ; expression supported by
            MPSS
          Length = 2138

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
 Frame = -1

Query: 298  QKNTENIYQEVKYKQERRSFYIIKYRKFNLT--SFGIIIITAIGAELQNEGKDNLFFFFY 125
            QK  E    ++K  ++R+SF  +K    N+T  S G+ +++ + A+LQ      +     
Sbjct: 1713 QKEVEKFASKMKETRKRKSFETLKLIAENVTFRSHGLKLLSPVTAQLQRHLTPKIKTNLE 1772

Query: 124  KMIK 113
            KM+K
Sbjct: 1773 KMLK 1776


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = -1

Query: 361 FKSAAETFHKDKXPNFLREILQKN--TENIYQEVK-YKQERRSFYIIKYRKFNLTSFGI 194
           FK  +ETF ++   + L+  L+KN   + I++ VK    E+ S+    +R F +  +GI
Sbjct: 12  FKGGSETFLQNVFESILKTYLRKNPMAKTIWELVKSVDNEKISYDHFFFRTFKVDGYGI 70


>At2g26620.1 68415.m03194 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
           (Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
           mays}; contains Pfam profile PF00295: Glycosyl
           hydrolases family 28 (polygalacturonases)
          Length = 402

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 553 RIPDKKKKLGLILNKFSLYQHNVAAEVCKPLRLDTSLCIQXPFDHSRNCSVNI 395
           RI   +     IL    +Y++    +V KP+ +D   C   P +H R   V I
Sbjct: 280 RIKTWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEHERKSHVQI 332


>At4g37640.1 68417.m05324 calcium-transporting ATPase 2, plasma
           membrane-type / Ca(2+)-ATPase isoform 2 (ACA2) identical
           to SP|O81108 Calcium-transporting ATPase 2, plasma
           membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2)
           {Arabidopsis thaliana}
          Length = 1014

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 265 KYKQERRSFYIIKYRKFNLTS--FGIIIITAIGAELQNEGK 149
           K+++ER+S+ +IK   FN T    G++I    G  ++   K
Sbjct: 538 KFQEERKSYKVIKVEPFNSTKKRMGVVIELPEGGRMRAHTK 578


>At4g34100.1 68417.m04838 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 1092

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 510 LLRISPSFFFLSGILNMXILYFLRNP 587
           +L+IS     L G+L   +LYFLR+P
Sbjct: 566 MLQISIFVSLLRGVLRPGVLYFLRDP 591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,533,557
Number of Sequences: 28952
Number of extensions: 219291
Number of successful extensions: 491
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)