Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0953
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.33 
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   1.3  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    27   1.3  
SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|c...    26   2.3  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   4.1  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   7.1  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.1 bits (62), Expect = 0.33
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 72  WPKLKKNLINITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLR 206
           WPKL+KN+  IT  +   T   S  F P       ++ H +LDLR
Sbjct: 746 WPKLRKNIRKITKPNGFTTDQHSQTFIP-------SQTHTKLDLR 783


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 281 SIPSLTNESWKQTFWCSNHHLXPQSTKVK 195
           SI  L + S   T  C N  + PQSTKVK
Sbjct: 184 SIIKLPDRSSSFTLQCINESVRPQSTKVK 212


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -3

Query: 291 GTRFDTIPD--KRKLETDLLVFEPPSXXPEYEGQDDND 184
           G R+    D  KRKLET+ L         E EG+DD D
Sbjct: 160 GVRYGFSDDIMKRKLETEKLEANNKEEKEEKEGKDDKD 197


>SPAC29A4.17c |||FUN14 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 147

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
 Frame = +3

Query: 39  YYNRQQIVPLEWPKLKKNLINITFQH---YLPTS---NPSAQFPP-RTFAC 170
           Y N + ++ + WP+L++ +I  T Q+   + P+S   N  + FP  R + C
Sbjct: 77  YINSKGLIRINWPQLQQQVIGPTEQYTGFHFPSSGRFNTQSTFPTIRNWIC 127


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/50 (20%), Positives = 23/50 (46%)
 Frame = +3

Query: 99  NITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGXKMVVRTPKGL 248
           N +F  Y  TSN      P +++  +  +++  D+     ++ +  PK +
Sbjct: 406 NASFSSYSSTSNTDKSLRPSSYSAVSESSNFTHDVSRDNKEISLNAPKSI 455


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 262 FVRDGIESCTGRXTGSGGKNSAMYAVTLRARQTEILPKV 378
           F  DG+  C  R TG    N+      L+   T++ PK+
Sbjct: 402 FRMDGVIECEIRLTGILNTNAINEDEDLKGHGTQVYPKI 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,494,172
Number of Sequences: 5004
Number of extensions: 27763
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)