Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0953
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272     29   1.3  
11_06_0183 - 20999343-20999865,21000351-21000748                       29   1.7  
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734...    28   3.0  
09_05_0016 + 20089545-20089748,20090072-20090263,20090644-200908...    27   5.3  
02_03_0164 - 15862166-15862366,15862443-15862508,15862754-158630...    27   5.3  
04_04_1100 + 30894575-30895012,30896082-30897044                       27   7.0  
08_02_0236 + 14652034-14652225,14652311-14652527,14652561-146532...    27   9.2  
07_01_0080 + 587674-588510                                             27   9.2  
03_06_0038 + 31227349-31227621,31228120-31228212,31229439-312295...    27   9.2  

>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
          Length = 786

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 54  QIVPLEWPKLKKNLINITFQHYLPTSNPSAQ 146
           Q V + W K + N IN +  HYLP  NP  Q
Sbjct: 322 QNVSMGWFKQEPNGINFSAAHYLPRCNPFNQ 352


>11_06_0183 - 20999343-20999865,21000351-21000748
          Length = 306

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 213 PEYEGQDDNDSWLLHRQKFLEETEQK 136
           P+++G+DD  +WL H ++F   TE +
Sbjct: 94  PKFDGKDDPLNWLNHCEQFFFRTENR 119


>11_06_0667 +
           26071774-26072070,26072352-26073153,26073209-26073411,
           26075078-26075521,26075703-26075758,26076323-26076402,
           26077098-26077174,26077279-26078301
          Length = 993

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 191 IMILGCCTGKSSWRKLSRRIRCWE 120
           I + GCCT +   RK+   I CW+
Sbjct: 208 IRLFGCCTERQYKRKIKLSIWCWK 231


>09_05_0016 +
           20089545-20089748,20090072-20090263,20090644-20090814,
           20090915-20091096,20091189-20091435,20091776-20091908,
           20092070-20092599,20092940-20093170
          Length = 629

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/52 (23%), Positives = 28/52 (53%)
 Frame = -3

Query: 261 RKLETDLLVFEPPSXXPEYEGQDDNDSWLLHRQKFLEETEQKD*MLGDNVEM 106
           +++   ++  +PPS   E EG++D    L    + ++E E++  M+ +  E+
Sbjct: 460 KRVTRSMISNDPPSKQTELEGKNDKVEVLDGDDEVVDEEEEEPTMISETTEL 511


>02_03_0164 -
           15862166-15862366,15862443-15862508,15862754-15863029,
           15864869-15864989,15865091-15865368
          Length = 313

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 302 LVQEARTPPCMQSRCVLAKLR 364
           L+  +R PP   S+CVLA+LR
Sbjct: 53  LLSASRPPPLFTSKCVLAELR 73


>04_04_1100 + 30894575-30895012,30896082-30897044
          Length = 466

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 274 GIESCTGRXTGSGGKNSAMYAVTLRARQTEIL 369
           G+  C G   GSGG  + + A TL+A   ++L
Sbjct: 49  GVFFCYGAGEGSGGGGALLPAATLKAALAKVL 80


>08_02_0236 +
           14652034-14652225,14652311-14652527,14652561-14653208,
           14653374-14654364,14654532-14654703
          Length = 739

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 300 SSAGTRFDTIPDKRKLETDLLVFEPPSXXPEYEGQD 193
           +S GT  + +P      TDL +FE PS   + E Q+
Sbjct: 528 ASVGTEIEEVPGLEWDGTDLEIFEDPSPAKDPEVQE 563


>07_01_0080 + 587674-588510
          Length = 278

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 213 PEYEGQDDNDSWLLHRQKFLEETEQKD*MLGDNV 112
           P+Y+G+DD  +W  H ++F    +  D   GD V
Sbjct: 148 PKYDGKDDPLNWFNHCEQFFRGQKTPD---GDRV 178


>03_06_0038 +
           31227349-31227621,31228120-31228212,31229439-31229575,
           31229953-31231030,31231757-31232374
          Length = 732

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = -1

Query: 260 ESWKQTFWCSNHHLXPQSTKVKTIMILGCCTGKSSWRKLS 141
           E W + +   N  L P S +V  +    C     +W+++S
Sbjct: 110 EHWYRLYKTDNQRLSPDSQQVSVLAESHCDLASGNWKEIS 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,865,523
Number of Sequences: 37544
Number of extensions: 185032
Number of successful extensions: 509
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)