Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0953
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 27 4.4
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 27 4.4
At5g13220.3 68418.m01518 expressed protein 27 5.9
At5g13220.2 68418.m01517 expressed protein 27 5.9
At5g13220.1 68418.m01519 expressed protein 27 5.9
At3g11420.1 68416.m01393 fringe-related protein similar to hypot... 27 5.9
At4g14905.2 68417.m02290 kelch repeat-containing F-box family pr... 27 7.7
At4g14905.1 68417.m02289 kelch repeat-containing F-box family pr... 27 7.7
At4g10670.1 68417.m01743 transcription elongation factor-related... 27 7.7
At2g25410.1 68415.m03043 hypothetical protein 27 7.7
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 204 EGQDDNDSWLLHRQKFLEETEQK 136
E +DD++ HRQK LEE E +
Sbjct: 130 ESKDDDEELSAHRQKMLEEIEHE 152
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 204 EGQDDNDSWLLHRQKFLEETEQK 136
E +DD++ HRQK LEE E +
Sbjct: 130 ESKDDDEELSAHRQKMLEEIEHE 152
>At5g13220.3 68418.m01518 expressed protein
Length = 185
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = -3
Query: 267 DKRKLETDLLVFEPPSXXPEYEGQD-DNDSWLLHR---QKFLEETEQK 136
D+ +ETDL V P + P+ GQ+ + D + R Q+FLE+ +++
Sbjct: 138 DESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKER 185
>At5g13220.2 68418.m01517 expressed protein
Length = 185
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = -3
Query: 267 DKRKLETDLLVFEPPSXXPEYEGQD-DNDSWLLHR---QKFLEETEQK 136
D+ +ETDL V P + P+ GQ+ + D + R Q+FLE+ +++
Sbjct: 138 DESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKER 185
>At5g13220.1 68418.m01519 expressed protein
Length = 197
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Frame = -3
Query: 267 DKRKLETDLLVFEPPSXXPEYEGQD-DNDSWLLHR---QKFLEETEQK 136
D+ +ETDL V P + P+ GQ+ + D + R Q+FLE+ +++
Sbjct: 138 DESSMETDLSVILPTTLRPKLFGQNLEGDLPIARRKSLQRFLEKRKER 185
>At3g11420.1 68416.m01393 fringe-related protein similar to
hypothetical protein GB:AAC23643 [Arabidopsis thaliana]
+ weak similarity to Fringe [Schistocerca
gregaria](GI:6573138);Fringe encodes an extracellular
protein that regulates Notch signalling.
Length = 505
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 206 TKVKTIMILGCCTGKSSWRKLSRRIRCWEIM 114
TKVK I++ T W K RR +C E+M
Sbjct: 451 TKVKRILVTSMKTDPEYWNKAPRR-QCCEVM 480
>At4g14905.2 68417.m02290 kelch repeat-containing F-box family
protein contains Pfam PF01344: Kelch motif (2 copies)
and PF00646: F-box domain; similar to putative SKP1
interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
thaliana}|19798784|gb|AU230074.1|AU230074
Length = 372
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 244 VCFQLSFVRDGIESCTGRXTGSGGKNSAMY 333
V + L + +G++SCTGR GG+ + ++
Sbjct: 293 VFWGLEGLPEGLQSCTGRMVNHGGRLAILF 322
>At4g14905.1 68417.m02289 kelch repeat-containing F-box family
protein contains Pfam PF01344: Kelch motif (2 copies)
and PF00646: F-box domain; similar to putative SKP1
interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
thaliana}|19798784|gb|AU230074.1|AU230074
Length = 372
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 244 VCFQLSFVRDGIESCTGRXTGSGGKNSAMY 333
V + L + +G++SCTGR GG+ + ++
Sbjct: 293 VFWGLEGLPEGLQSCTGRMVNHGGRLAILF 322
>At4g10670.1 68417.m01743 transcription elongation factor-related
low similarity to chromatin-specific transcription
elongation factor FACT 140 kDa subunit [Homo sapiens]
GI:5499741
Length = 470
Score = 26.6 bits (56), Expect = 7.7
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 42 YNRQQIVPLEWPKLKKNLINITFQHYLPTSNPSAQFPPRTFACATTKNHYRLDLRTLGXK 221
Y+ +IV + + +KN IN+ F H+ N Q P FA + + + LR G
Sbjct: 218 YDADEIVEEQRERDRKNKINMDFNHFANQVNDMWQLP--QFASLSLE--FDQPLREFGFN 273
Query: 222 MVV-RTPKGLFPTFVC 266
V +T + PT C
Sbjct: 274 GVPHKTSTFIIPTSSC 289
>At2g25410.1 68415.m03043 hypothetical protein
Length = 377
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 78 KLKKNLINITFQHYLPTSNPSAQFPPRTFACA 173
KL L+N+ F + P N S Q P +F+C+
Sbjct: 4 KLLPLLLNLIFLFFFPLLNASEQKPCYSFSCS 35
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,951,762
Number of Sequences: 28952
Number of extensions: 150949
Number of successful extensions: 430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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