Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0950
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)                      40   9e-04
SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)                     38   0.004
SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.019
SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0)                     36   0.025
SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.043
SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)                     33   0.13 
SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)                   33   0.17 
SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)                     31   0.40 
SB_25029| Best HMM Match : Collagen (HMM E-Value=0.38)                 31   0.71 
SB_5771| Best HMM Match : Kelch_1 (HMM E-Value=0)                      30   0.93 
SB_38405| Best HMM Match : BACK (HMM E-Value=0)                        29   1.6  
SB_18403| Best HMM Match : BACK (HMM E-Value=0)                        29   1.6  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)              28   5.0  
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_2676| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 645

 Score = 40.3 bits (90), Expect = 9e-04
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 248 IATXXXVLSVCSPYFXXMFKMN--PTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEEL 421
           I+    VLS CS YF  MF  N   ++  +++   +  +AL+ L+ F Y G+  +  E +
Sbjct: 43  ISAHRVVLSACSAYFDAMFTGNLLESKKQVIYIKGIDETALQLLVDFAYTGKAEITQENV 102

Query: 422 ASFXSTAGQLQV 457
                 A  LQ+
Sbjct: 103 QLLLPAANMLQL 114


>SB_37574| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
 Frame = +2

Query: 266 VLSVCSPYFXXMF--KMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXST 439
           VL+ CS YF  MF  ++  ++  I+   D+    ++ L++F Y G V +  E + +  +T
Sbjct: 29  VLASCSAYFYAMFNGELAESKQKIITMKDILPDYMQVLVEFAYTGRVEITVENVQNLLAT 88

Query: 440 AGQLQ 454
           A  LQ
Sbjct: 89  ASLLQ 93


>SB_40385| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 823

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +2

Query: 242 SXIATXXXVLSVCSPYFXXMF--KMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXE 415
           S I     VL+ CSPYF  MF  +M  ++   +   DV  SA+  L+ F Y   + ++  
Sbjct: 68  STIHAHRVVLAACSPYFRAMFTREMAESRQAEITIRDVDESAMNLLITFAYTASITIEET 127

Query: 416 ELASFXSTAGQLQV 457
            + +    A  LQ+
Sbjct: 128 NVQTLLPAACLLQL 141


>SB_2806| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +2

Query: 266 VLSVCSPYFXXMFK--MNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXST 439
           VL+  S YF  MF   M  T    V  TD+  +A++ L+ + Y  E+ ++ + + +  S 
Sbjct: 51  VLASFSDYFSAMFTGDMAETSQNTVHLTDMDPAAVQALISYSYTSEIEIRVDNVENLLSV 110

Query: 440 AGQLQV 457
           A  LQ+
Sbjct: 111 ACILQI 116


>SB_15301| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 590

 Score = 35.5 bits (78), Expect = 0.025
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 266 VLSVCSPYFXXMFK--MNPTQHPIVFXTDVSHSALRDLLQFMYQGEV 400
           +LS  S YF  MF   M  +   +V  T V+  ++R +L F+Y GE+
Sbjct: 51  ILSASSDYFFAMFNGNMKESSQDVVTITGVTPDSMRSILNFIYTGEI 97


>SB_13053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 34.7 bits (76), Expect = 0.043
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +2

Query: 248 IATXXXVLSVCSPYFXXMFKMNP---TQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEE 418
           I +   VL+  SPYF  MF  N    TQ  I    D+   AL+ ++++ Y G++ +  + 
Sbjct: 44  IPSHKLVLAASSPYFRAMFTSNLLECTQRTITLY-DIDVGALQQIVEYFYTGKITIDEDN 102

Query: 419 LASFXSTAGQLQV 457
           +      +  LQV
Sbjct: 103 VQFLLHASCLLQV 115


>SB_55145| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 625

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 266 VLSVCSPYFXXMF--KMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXST 439
           VL+ CS YF  MF   M  +   ++    +S  ++  L+ FMY  ++ +  + + S  + 
Sbjct: 51  VLASCSAYFHSMFTNSMLESSQEVITIQGLSEKSVIQLINFMYTRKITITIDNIESLLTA 110

Query: 440 AGQLQV 457
           +   Q+
Sbjct: 111 SAVFQL 116


>SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)
          Length = 521

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +2

Query: 266 VLSVCSPYFXXMFK--MNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXST 439
           V+S  SPYF  +F   +  +    V    +       LL F+Y G +NV  E +      
Sbjct: 51  VVSASSPYFEVLFSGGLRESYLDTVTIQGIDSETFSALLDFIYTGVINVNEENVQQLLPA 110

Query: 440 AGQLQV 457
           A  LQ+
Sbjct: 111 AKMLQL 116


>SB_54322| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 587

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +2

Query: 266 VLSVCSPYFXXMF--KMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXST 439
           VL+  S YF  +F  +M     P V   ++  S +  +L ++Y GE+ V         ++
Sbjct: 47  VLAASSKYFYGLFTSEMIEKNAPSVKLQELRASVMNHILTYLYTGEITVTELNAEDLIAS 106

Query: 440 AGQLQVXXLTG 472
           A  L +  L G
Sbjct: 107 ANYLLIPRLKG 117


>SB_25029| Best HMM Match : Collagen (HMM E-Value=0.38)
          Length = 388

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 227 RWLPKSXIATXXXVLSVCSPYFXXMFKMNPTQHPIVFXTD 346
           RW  +  I+T   ++ +CSP +  M +M P + P  F T+
Sbjct: 286 RWAQQQ-ISTSSKIIVLCSPKYLKMCQMRPKEDPKAFLTE 324


>SB_5771| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 595

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 266 VLSVCSPYFXXMFKMN-PTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEEL 421
           +L+  S YF  MF  +  T    V   +++ +A+  LL F+YQG++ +  E +
Sbjct: 51  ILAASSDYFMAMFSGHMATVDRTVVVQEITSTAMEVLLAFIYQGKLLITEENV 103


>SB_38405| Best HMM Match : BACK (HMM E-Value=0)
          Length = 423

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 266 VLSVCSPYFXXMF--KMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXST 439
           VL+ CS YF  MF  ++  ++   +    +   A+  L++F Y   + V  + + +    
Sbjct: 59  VLAACSQYFHAMFTSELLESRQKEISLQGLQPDAMELLVEFAYTARIQVSEDNVQALLPA 118

Query: 440 AGQLQV 457
           A  LQ+
Sbjct: 119 ASLLQL 124


>SB_18403| Best HMM Match : BACK (HMM E-Value=0)
          Length = 423

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 266 VLSVCSPYFXXMF--KMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXST 439
           VL+ CS YF  MF  ++  ++   +    +   A+  L++F Y   + V  + + +    
Sbjct: 59  VLAACSQYFHAMFTSELLESRQKEISLQGLQPDAMELLVEFAYTARIQVSEDNVQALLPA 118

Query: 440 AGQLQV 457
           A  LQ+
Sbjct: 119 ASLLQL 124


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 124 MASDEQFSLCWNNFHANMSAGFHGL 198
           M S E     WN F  N++AG+H L
Sbjct: 203 MMSYEGMQFDWNTFSVNLTAGYHQL 227


>SB_38976| Best HMM Match : BACK (HMM E-Value=3.09967e-42)
          Length = 603

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
 Frame = +2

Query: 251 ATXXXVLSVCSPYFXXMFK--MNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELA 424
           A    VL+  S +F  MF   M  +    +    ++  AL  +L F Y  E+N+  + + 
Sbjct: 64  AAHRCVLAANSQFFYTMFTSGMRDSNDSRIKLCSLTSGALSSILDFFYTREINISRDNVV 123

Query: 425 SFXSTAGQL 451
                A  L
Sbjct: 124 DILEAASFL 132


>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2201

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 22/118 (18%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
 Frame = +2

Query: 119 LSWRRTNNFHYAGTISTQICQ-RAFMACCRVEIS*T*RWLPKSXIATXXXVLSVCSPYFX 295
           + ++  ++  Y  ++++Q+ Q +   + C + +  T     +        VL+  S YF 
Sbjct: 1   MDYQNIDDVEYRKSVTSQLMQYQESESMCDITLKTT----SEDIFPAHKIVLAAKSDYFK 56

Query: 296 XMFKMNPTQHPIV-FXTDVSHSALRDLLQFMYQGEVNVKXEELASFXSTAGQLQVXXL 466
            +F     +        D+S   L+ +L+++Y G+V++      S    A  L +  L
Sbjct: 57  ALFTTEMAEKNCQEISLDISTRTLKAILKYVYCGDVSLNVSNARSVFVAADYLMMDHL 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,736,613
Number of Sequences: 59808
Number of extensions: 212270
Number of successful extensions: 341
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)