Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0950
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    37   0.007
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    37   0.007
At1g01640.2 68414.m00082 speckle-type POZ protein-related contai...    30   0.76 
At1g01640.1 68414.m00081 speckle-type POZ protein-related contai...    30   0.76 

>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +2

Query: 266 VLSVCSPYFXXMFK--MNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVK 409
           +LS+ S  F  MF   M+ +    ++ TDVS  A + ++ FMY GE+N++
Sbjct: 370 ILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419



 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 302 FKMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXSTAGQLQVXXL 466
           F +  +   ++    VS+  L  LLQ++Y G   +   ELA     + + +V  L
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSL 291


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = +2

Query: 266 VLSVCSPYFXXMFK--MNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVK 409
           +LS+ S  F  MF   M+ +    ++ TDVS  A + ++ FMY GE+N++
Sbjct: 370 ILSLWSVAFAKMFTNGMSESHSSTIYLTDVSPEAFKAMMNFMYSGELNME 419



 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +2

Query: 302 FKMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEELASFXSTAGQLQVXXL 466
           F +  +   ++    VS+  L  LLQ++Y G   +   ELA     + + +V  L
Sbjct: 237 FPLRSSDGDVIQLRGVSYPILHALLQYIYTGRTQILESELAPLRDLSSKFEVMSL 291


>At1g01640.2 68414.m00082 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +2

Query: 248 IATXXXVLSVCSPYFXXMF---KMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEE 418
           I T   VL+  S  F  M    +   +    +   D+SH  L+ LL+F+Y G +     +
Sbjct: 37  IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ 96

Query: 419 LASFXSTAGQLQVXXL 466
             S    A +  +  L
Sbjct: 97  YRSLYLAADKYDISYL 112


>At1g01640.1 68414.m00081 speckle-type POZ protein-related contains
           Pfam profile:PF00651 BTB/POZ domain; similar to
           Speckle-type POZ protein (SP:O43791) [Homo sapiens]
          Length = 207

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
 Frame = +2

Query: 248 IATXXXVLSVCSPYFXXMF---KMNPTQHPIVFXTDVSHSALRDLLQFMYQGEVNVKXEE 418
           I T   VL+  S  F  M    +   +    +   D+SH  L+ LL+F+Y G +     +
Sbjct: 37  IPTHKAVLAARSKVFRNMLDSDECKTSPEESITLPDLSHDELKSLLEFLYSGNLKAPYNQ 96

Query: 419 LASFXSTAGQLQVXXL 466
             S    A +  +  L
Sbjct: 97  YRSLYLAADKYDISYL 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,818,876
Number of Sequences: 28952
Number of extensions: 146087
Number of successful extensions: 249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)