Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0947
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote... 34 0.072
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS... 33 0.17
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 29 1.5
At1g78910.1 68414.m09199 pseudouridine synthase family protein l... 29 2.0
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 28 3.6
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 28 4.7
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa... 27 8.3
At2g27980.1 68415.m03391 expressed protein 27 8.3
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS... 27 8.3
At4g08350.1 68417.m01380 KOW domain-containing transcription fac... 24 8.5
>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
(HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
(GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
17 (19), 7995 (1989))
Length = 157
Score = 33.9 bits (74), Expect = 0.072
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +2
Query: 296 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 451
D+ EE+ V+ DG I+ + G+ +EEK D+ + R +FTRR+ LPE E
Sbjct: 66 DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125
Query: 452 SVES 463
+++
Sbjct: 126 EIKA 129
>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
(HSP17.4-CI) identical to 17.4 kDa class I heat shock
protein SP:P19036 from [Arabidopsis thaliana]
Length = 156
Score = 32.7 bits (71), Expect = 0.17
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +2
Query: 296 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 451
DV EE+ V+ DG I+ + G+ +EEK D + R +F RR+ LPE E
Sbjct: 65 DVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVE 124
Query: 452 SVES 463
V++
Sbjct: 125 EVKA 128
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +2
Query: 296 DVQHFAPEEISVKTA-DGYIVVEG-KHEEKKDQHGYISR------QFTRRYALPEGCTAE 451
D+ EE+ V+ D + + G +H EK+D++ R QFTRR+ LPE +
Sbjct: 62 DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121
Query: 452 SVES 463
V++
Sbjct: 122 QVKA 125
>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 478
Score = 29.1 bits (62), Expect = 2.0
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 461 TPQIQPYSPPAKRSDE*IDAICNHADLSSPRVCLQPR--CSRPPF*QRFLPGRNAGRPG 291
T I+ YS A I N A L P+ PR S PPF LPG+NAG G
Sbjct: 14 TVLIRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADG 72
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +2
Query: 296 DVQHFAPEEISVKTADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 451
D+ EE+ V+ D ++ + G+ +EEK D+ + R +F RR+ LPE E
Sbjct: 68 DLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKME 127
Query: 452 SVES 463
V++
Sbjct: 128 EVKA 131
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 317 EEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVES 463
+EI D Y EG EE+ ++ R + L E C E+VES
Sbjct: 48 DEIDSAYGDFYEYEEGVPEEESRKNNRYERVVNYEFELAEDCEDENVES 96
>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
family protein contains Pfam domain PF00149: Ser/Thr
protein phosphatase
Length = 474
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = +2
Query: 218 RGSPCCRGSRPWPSIKSDKXKFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGY 397
+G PC S P I+ +Q D E ++ K +V+EG HE + G
Sbjct: 240 KGVPCFSCSFPDAPIRET---YQPRWDAWGRFMEPLTSKVPT--MVIEGNHEIEPQASGI 294
Query: 398 ISRQFTRRYALP 433
+ ++ R+A+P
Sbjct: 295 TFKSYSERFAVP 306
>At2g27980.1 68415.m03391 expressed protein
Length = 1037
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 227 PCCRGSRPWPSIKSDKXKFQVNLDVQHFAPEEISVKTADGYIVVEG 364
PC R +R +K + K +VN D H PE+ ++ + D + V G
Sbjct: 205 PCKRLTRSM--LKVEGIKSEVNADDDHVNPEKDAIGSEDNCVDVSG 248
>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
(HSP17.8-CI) similar to 17.5 kDa class I heat shock
protein SP:P04793 from [Glycine max]; contains Pfam
PF00011: Hsp20/alpha crystallin family
Length = 157
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +2
Query: 296 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 451
D+ EE+ V+ D ++ + G+ EEK+D + R QF+R++ LPE +
Sbjct: 64 DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123
Query: 452 SVES 463
V++
Sbjct: 124 QVKA 127
>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
family protein chromatin structural protein homolog
Supt5hp - Mus musculus,PID:g2754752
Length = 1029
Score = 24.2 bits (50), Expect(2) = 8.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 488 DNTPSEDSRTPQIQPYSPPAK 426
D P +PQ QP SPP++
Sbjct: 818 DGNPGSWGTSPQYQPGSPPSR 838
Score = 21.0 bits (42), Expect(2) = 8.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -1
Query: 392 HADLSSPRVCLQPRCSRPPF*QRFLPGRNAGRPGLLGT 279
+A+ SP + P P +LPG G+P GT
Sbjct: 870 YANAPSPYLPSTPGQPMTPSSASYLPGTPGGQPMTPGT 907
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,872,612
Number of Sequences: 28952
Number of extensions: 242217
Number of successful extensions: 630
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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