Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0946
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   4.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   6.0  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    25   7.9  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    25   7.9  

>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 351 NLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRI 491
           N ++  S+    SGI  ++ +    P++S  +S   +NTPV    +I
Sbjct: 136 NTTIGVSTPRTDSGIDDIELTQRTPPSSSHTSSSILQNTPVTPSRKI 182


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 318 IILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMA 455
           I L  + +S+++   N S  A+ SG+AS  F N +    + NTSM+
Sbjct: 49  IALSEIPSSSKSGKTNGSKAAVESGLASGAFGN-RTGNMNRNTSMS 93


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +3

Query: 330 HMVNSAQ-NLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMF 506
           H  NS   N++V++S        AS DF  I   TTS+   +A+ N  +    R    +F
Sbjct: 447 HKKNSFSINMTVHESLLLFTWSTASFDFHCIANATTSSQLLIANVNKILRWIRREENRLF 506

Query: 507 LLTQINW 527
           + T +++
Sbjct: 507 IQTNLSF 513


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +3

Query: 321 ILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASR--NTPVEEDPRII 494
           +L H  +S   +   D   A PS   S    N  +PTT  NTS A    N+     PR++
Sbjct: 277 VLWHNNSSTPQIQFRDLPGAHPSPTPS----NAGIPTTLTNTSSAPNFANSTFRFPPRVV 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,904
Number of Sequences: 5004
Number of extensions: 54645
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)