Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0946
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552... 45 7e-05
09_02_0399 - 8569478-8569795,8570219-8570287,8570760-8570848,857... 31 0.88
03_05_0149 - 21278418-21278747,21279170-21279238,21279709-212797... 31 0.88
05_01_0049 - 337132-337488,337613-337765,337924-338551,338617-33... 30 2.0
03_01_0640 - 4683970-4684481,4685197-4685343,4685606-4686764,468... 29 3.5
07_03_0794 + 21562995-21563004,21564151-21565799 29 4.7
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 29 4.7
11_01_0170 - 1373986-1374013,1374061-1374326,1374693-1374926,137... 28 8.2
>02_01_0742 +
5524149-5524214,5524609-5524641,5524750-5524880,
5525174-5525282,5525406-5525522,5525896-5525961,
5526314-5526376,5526459-5526503,5526690-5526751,
5526974-5527067,5527375-5527467,5527561-5527630,
5527816-5527892,5527976-5528033,5528135-5528166,
5528245-5528376
Length = 415
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +1
Query: 118 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHF 252
MKVTV T ++ I +DV D +EN KA E+E+ P + LHF
Sbjct: 1 MKVTVMTADEQILTVDVDPDESVENLKALLEVETSVPLRQQQLHF 45
>09_02_0399 -
8569478-8569795,8570219-8570287,8570760-8570848,
8571446-8571542,8571920-8571991
Length = 214
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 303 HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 416
H G ++ L H++ A +L++N +Q + S S+D N
Sbjct: 123 HPGKILRLCHLIKGADHLAINSINQLMSSNQRSIDPQN 160
>03_05_0149 -
21278418-21278747,21279170-21279238,21279709-21279797,
21280395-21280467,21280846-21280917
Length = 210
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 303 HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSN 416
H G ++ L H++ A +L++N +Q + S S+D N
Sbjct: 115 HPGKILRLCHLIKGADHLAINSINQLMSSNQRSIDPQN 152
>05_01_0049 -
337132-337488,337613-337765,337924-338551,338617-338852,
339563-339577
Length = 462
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 333 MVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNT 467
M N+AQ V+D ALP I +Q+PT + T++A R T
Sbjct: 1 MPNNAQCQVVDDRLSALPDEILIDILQRLQLPTAARTTTLARRWT 45
>03_01_0640 -
4683970-4684481,4685197-4685343,4685606-4686764,
4686851-4686907
Length = 624
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 327 LHMVNSAQNLSVNDSSQALPSGIASLDFSNIQV 425
L VN + NL V SS +LP G+ SLD S ++
Sbjct: 395 LRAVNLSGNLIVQISSGSLPKGLHSLDLSRNKI 427
>07_03_0794 + 21562995-21563004,21564151-21565799
Length = 552
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 303 HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVEED 482
H+ + I +V ++S Q LP G+ F++ PT S R + ED
Sbjct: 119 HEFEEIKPAQLVRQRSRTWSHESRQPLP-GVGRSQFASGGYPTASYEFRPEKRQRELRED 177
Query: 483 PRIIREMFL 509
P+II + L
Sbjct: 178 PQIIVKQLL 186
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 363 NDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPV----EEDPRIIREMFLLTQINWH 530
N++ QA+PS + +++ + V TTS ++S + V E D R +R F N
Sbjct: 420 NENHQAIPSEVTAVNTEHENVGTTSPSSSNQIKKDVVAQGTEHDSRAVRFNFESKNQNPS 479
Query: 531 YLNRIIQDLP 560
+ + + D+P
Sbjct: 480 FKDLVRNDVP 489
>11_01_0170 -
1373986-1374013,1374061-1374326,1374693-1374926,
1375034-1375171,1375255-1375557,1376008-1376172,
1376469-1376933
Length = 532
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 387 SGIASLDFSNIQVPTTSA--NTSMASRNTPVEEDPRIIREMFLLTQINWH 530
S + S DFS+++ P ++ N SRNT + I E+ T +WH
Sbjct: 384 STLDSTDFSSLEDPQINSVVNIPQKSRNTSFNKGGSSIAEIHYPTDRHWH 433
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,933,738
Number of Sequences: 37544
Number of extensions: 317324
Number of successful extensions: 795
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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