Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0946
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)              56   2e-08
SB_59132| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_46192| Best HMM Match : ubiquitin (HMM E-Value=0.12)                30   2.1  
SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)             29   4.8  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      28   6.3  

>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
          Length = 348

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 27/44 (61%), Positives = 33/44 (75%)
 Frame = +1

Query: 118 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLH 249
           MKVTVT  +  IF LDVS DLE+ENF+A  E ESG PA +I+L+
Sbjct: 1   MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLY 44



 Score = 34.7 bits (76), Expect = 0.073
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
 Frame = +3

Query: 255 GKPLLNNKKSLKEHGVHDGDVIILLHMVNSAQNLSVNDSSQALPSGIA-SLDFSNIQVP- 428
           G  L + KK+L  + V + DVI+++     A++ + N  + A PSG   ++D+  IQ+P 
Sbjct: 47  GVQLSDLKKTLTAYSVKENDVILMVR--RQARHAARN--TVAPPSGQPMAIDWGQIQLPG 102

Query: 429 TTSANTSMASRNTPV----EEDPRIIREMFL 509
              + T  A    P     +E P  IR+MFL
Sbjct: 103 NNQSRTQPAPSTAPPPAANQESPEYIRDMFL 133


>SB_59132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 22/42 (52%), Positives = 31/42 (73%)
 Frame = +2

Query: 512 NPDQLALLKQNNPRLADALLTGSLDTFAAVLREQILARTERQ 637
           +P Q++LLK+ NP LADAL++G+L  FA VL +Q   R ER+
Sbjct: 5   DPHQMSLLKERNPELADALISGNLQKFADVLNKQRQERAERE 46


>SB_46192| Best HMM Match : ubiquitin (HMM E-Value=0.12)
          Length = 533

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 121 KVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAK 234
           K  V   NDDI  L+++ D  + N K  CE   G P +
Sbjct: 6   KFEVLLPNDDIECLEIASDKTVYNLKLICEEHFGVPVE 43



 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 121 KVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAK 234
           K  V   NDDI  L+++ D  + N K  CE   G P +
Sbjct: 81  KFEVLLPNDDIECLEIASDKTVYNLKLICEEHFGVPVE 118


>SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)
          Length = 783

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 276 KKSLKEHGVHDGDVIILLHMVNSAQNLSVNDSSQALPSGIAS 401
           KK +KEHG+ +  +I  +   ++AQ L  N+S +   S I S
Sbjct: 571 KKKVKEHGLRNSLLIAPMPTASTAQILGNNESIEPYTSNIYS 612


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 376 WLESLTLRFCAEFTM-CRRIITSPSWTPCSFNDFLLFRSGLP 254
           W+ S   +  A+  + C R+    +WTPCS  +  ++ +  P
Sbjct: 55  WIHSSAAKSLAKTKLRCLRLSWKQAWTPCSLQETTIYTNNPP 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,334,709
Number of Sequences: 59808
Number of extensions: 395027
Number of successful extensions: 864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)