Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0946
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13235.1 68416.m01666 ubiquitin family protein contains INTER...    39   0.004
At1g16190.1 68414.m01939 DNA repair protein RAD23, putative simi...    30   1.3  
At2g20470.1 68415.m02390 protein kinase, putative contains prote...    28   6.8  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    28   6.8  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    28   6.8  
At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase, pu...    27   9.0  
At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase / c...    27   9.0  
At3g06240.1 68416.m00717 F-box family protein contains F-box dom...    27   9.0  
At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase / c...    27   9.0  

>At3g13235.1 68416.m01666 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 414

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 118 MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFKAN 261
           M++TV T  + I  LDV     +EN KA  E+ES  P +   L +  N
Sbjct: 1   MRITVMTAGEQIITLDVDSQETVENVKALLEVESNVPIQQQQLLYNGN 48


>At1g16190.1 68414.m01939 DNA repair protein RAD23, putative similar
           to DNA repair by nucleotide excision (NER) RAD23
           protein, isoform II GI:1914685 from [Daucus carota]
          Length = 368

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/76 (23%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
 Frame = +3

Query: 264 LLNNKKSLKEHGV-HDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSA 440
           +L ++ +L E+ V  +G ++++L    +A +   + S+Q   +  +++  + +  P+T+ 
Sbjct: 52  VLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPS-STQPTSTTTSTISSTTLAAPSTTQ 110

Query: 441 NTSM-ASRNTPVEEDP 485
           + ++ AS +TPV+E P
Sbjct: 111 SIAVPASNSTPVQEQP 126


>At2g20470.1 68415.m02390 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 596

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 145 DDIFVLDVSEDLELENFKAFCEIES 219
           D  FV +V++DL+ +NF+ F E ES
Sbjct: 433 DAAFVPEVNDDLDTQNFEKFDESES 457


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -2

Query: 481  SSSTGVFLEAID----VFADVVGTWMLLKSRLAMPLGKAWLESLTLRFCA 344
            SS+ G+ ++ I+    V AD + + + L  RLA PLGK  L+ L L  CA
Sbjct: 2757 SSADGLKVKEIEGDPLVNADALKSLIRLL-RLAQPLGKGLLQRLLLNLCA 2805


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = -2

Query: 481  SSSTGVFLEAID----VFADVVGTWMLLKSRLAMPLGKAWLESLTLRFCA 344
            SS+ G+ ++ I+    V AD + + + L  RLA PLGK  L+ L L  CA
Sbjct: 2984 SSADGLKVKEIEGDPLVNADALKSLIRLL-RLAQPLGKGLLQRLLLNLCA 3032


>At5g58710.1 68418.m07355 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           (ROC7) similar to cyclophilin [Arabidopsis thaliana]
           gi|2443755|gb|AAB71401
          Length = 204

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 184 LENFKAFCEIESGFPAKDITLHFKANHF 267
           +ENF+A C  E G       LH+K + F
Sbjct: 64  VENFRALCTGEKGIGKNGKALHYKGSSF 91


>At4g38740.1 68417.m05487 peptidyl-prolyl cis-trans isomerase /
           cyclophilin / rotamase / cyclosporin A-binding protein
           (ROC1) identical to SP|P34790 Peptidyl-prolyl cis-trans
           isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin)
           (Cyclosporin A-binding protein) {Arabidopsis thaliana}
          Length = 172

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 187 ENFKAFCEIESGFPAKDITLHFKANHF 267
           ENF+A C  E G       LHFK + F
Sbjct: 34  ENFRALCTGEKGVGGTGKPLHFKGSKF 60


>At3g06240.1 68416.m00717 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 427

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 115 TMKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFKANHF 267
           +MK   +T ND+  +L++  DL L NF+       G     ++  F+AN +
Sbjct: 363 SMKPLCSTKNDEEVLLELDGDLVLYNFETNASSNLGICGVKLSDGFEANTY 413


>At2g21130.1 68415.m02507 peptidyl-prolyl cis-trans isomerase /
           cyclophilin (CYP2) / rotamase identical to cyclophilin
           [Arabidopsis thaliana] gi|2443757|gb|AAB71402; similar
           to peptidyl-prolyl cis-trans isomerase, PPIase
           (cyclophilin, cyclosporin A-binding protein)
           [Arabidopsis thaliana] SWISS-PROT:P34790
          Length = 174

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 187 ENFKAFCEIESGFPAKDITLHFKANHF 267
           ENF+A C  E G       LHFK + F
Sbjct: 35  ENFRALCTGEKGVGRSGKPLHFKGSSF 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,200,475
Number of Sequences: 28952
Number of extensions: 270835
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)