Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0945
         (419 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   1.2  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   1.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   8.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   8.5  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 179 AVLRSSVCLGQLSSEMAYKTASFFNRFDSLPVP 277
           A L+SS C   LSS  +    SF    D  P+P
Sbjct: 26  ATLQSSACTDDLSSCWSEDMGSFSLPLDLEPLP 58


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = +2

Query: 137 VLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFF--NRFDSLPV 274
           V+  ALW  T +   +L +  C G  S         F+  N   ++PV
Sbjct: 283 VILCALWITTLLLFTILLAYGCAGATSEAEKIAKICFYWLNEIPTMPV 330


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 214 KLTEANTGAEDRNLHICNIP 155
           +L  A      +N+H C+IP
Sbjct: 301 RLGPAGVHLRKKNIHSCHIP 320


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 195 LERRTAIFIFVTYHRAAWST 136
           + ++    IFVTY    WS+
Sbjct: 534 ITKQLIFMIFVTYQLYCWSS 553


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,562
Number of Sequences: 336
Number of extensions: 1998
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)