Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0945
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0505 + 25719959-25720052,25721548-25722266                       31   0.38 
05_04_0293 - 19898254-19898819,19899698-19899701                       28   3.5  
03_02_0091 + 5574528-5577254                                           28   3.5  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    27   4.6  
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383...    27   4.6  
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    27   6.1  
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285...    27   6.1  
03_02_0246 - 6772369-6772808,6773223-6775788                           27   6.1  
03_01_0257 + 1994645-1995061                                           27   8.1  

>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 25/76 (32%), Positives = 31/76 (40%)
 Frame = +1

Query: 187 PLQCLPRSAFKRNGLQDCQFFQQVRFATCAVPALVLNRVHRPVRRVCDAPRPARHTSHDS 366
           P Q  PR     +G +     +  R A  A P     R+    RR  D PRPAR   H +
Sbjct: 51  PNQRAPRRLIGDHGRKPLTLHEGRREAF-ATPPKSYGRLLGRRRRHRDLPRPARGVDHPA 109

Query: 367 VTLI*CHNGSHLATLR 414
           VTL   H  S    +R
Sbjct: 110 VTLRGLHPSSETGDIR 125


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 104 PPFACILLQSCVLHAAL 154
           PP AC +LQ C LH+ L
Sbjct: 82  PPLACAILQECELHSYL 98


>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 119 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNR 256
           + L   V  AALW   ++  A  R  VC G +S     K   FF R
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFER 526


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +3

Query: 87  NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWL 230
           N  +SL+ L      HV S +PY    I RLR+SAP    +  +A W+
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWM 587


>04_04_1634 +
           34937087-34937198,34937652-34937790,34938263-34938334,
           34938414-34938546,34938591-34938730,34939478-34939585,
           34939650-34939720,34940297-34940545,34940618-34940823,
           34940894-34941026,34941099-34941101,34941136-34941293,
           34941420-34941683,34941869-34942114
          Length = 677

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 184 PPLQCLPRSAFKRNGLQDCQFFQQVRFATC 273
           P L+ LPRS+F+ N LQD    +Q  F  C
Sbjct: 228 PCLKYLPRSSFQGNCLQDEYSVRQRAFQIC 257


>06_03_0927 +
           26015956-26018230,26018323-26018471,26018550-26018618,
           26018701-26018853,26018927-26019090,26019207-26019354,
           26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 188 GGPQSSYL*HTIGPHGV 138
           GGP SSY+  T+GP GV
Sbjct: 606 GGPYSSYVVATVGPGGV 622


>05_05_0237 -
           23526613-23527178,23527979-23528066,23528384-23528527,
           23528674-23528790,23528860-23528970,23530911-23531062,
           23531362-23531450,23531664-23531761
          Length = 454

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 242 WQSCKPFRLKADRGKHWSGGPQS 174
           W   +P R+   +G  W G PQS
Sbjct: 107 WNGMRPERVSFSQGPGWQGAPQS 129


>03_02_0246 - 6772369-6772808,6773223-6775788
          Length = 1001

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 157 VCYKYEDCGPPLQCLPRSAFKRNGLQDCQF 246
           +CY + DC PP+  L R     N L D +F
Sbjct: 793 LCYLHHDCSPPI--LHRDVKSNNILLDAEF 820


>03_01_0257 + 1994645-1995061
          Length = 138

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 124 TTIMCTPCGPMVCYKYEDCGPP 189
           T I C  CG ++ Y Y+D GPP
Sbjct: 77  TRISCDACGRLLGYVYDD-GPP 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,100,139
Number of Sequences: 37544
Number of extensions: 212273
Number of successful extensions: 436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)