Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0945
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.8  
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_1314| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  
SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)               27   8.3  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +1

Query: 151 PMVCYKYEDCGPPLQCLP-----RSAFKRNGLQDCQFFQQVRFATCA 276
           P VC+  E C P   C P     +   K  G+QDC      R++ C+
Sbjct: 479 PKVCFCDEFCEPAGDCCPDFKAVKEECKLQGVQDCVVSTWSRWSPCS 525


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 120 FYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVF 248
           FYY+H+ S      L++  +    P+FA +  + +++ +LP F
Sbjct: 103 FYYDHLMSRDGSKPLRVRSMVGLVPLFACLVLEDEFVQKLPGF 145


>SB_1314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 180 RSSAPVFASVS-FQAKWLTRLPVFSTGSIRYLCRASSS 290
           R++  +FA +  F A WL   P FS   + Y CRA +S
Sbjct: 223 RTAVTIFALILLFLATWL---PFFSLNLVLYTCRACAS 257


>SB_39599| Best HMM Match : Extensin_2 (HMM E-Value=0.09)
          Length = 564

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 259 RFATCAVPALVLNRVHRPVRRVCDAPRPARHTSH 360
           RFA    P  +   V     R+ +AP P+R+TSH
Sbjct: 16  RFANAPHPTPLGTLVTNNSPRLANAPHPSRYTSH 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,591,343
Number of Sequences: 59808
Number of extensions: 248734
Number of successful extensions: 1051
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)