Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0945
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical p...    27   4.1  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical...    26   9.5  

>Z81497-7|CAB04083.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -3

Query: 330 IAHTADRAVDTVED*SWHGTGSESNLLKKLAVL*AISLES*PRQTLERRTAIFIFV 163
           I  TA+R   T    +  GT SES L++KLA      L++  R+ ++ RTA  I++
Sbjct: 96  ICSTANRTTQTCHATNIAGTNSESCLIEKLANSLLEHLQA--RRPIKARTAFPIYL 149


>Z75955-17|CAB00127.3|  652|Caenorhabditis elegans Hypothetical
           protein R07B7.2 protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = -3

Query: 330 IAHTADRAVDTVED*SWHGTGSESNLLKKLAVL*AISLES*PRQTLERRTAIFIFV 163
           I  TA+R   T    +  GT SES L++KLA      L++  R+ ++ RTA  I++
Sbjct: 96  ICSTANRTTQTCHATNIAGTNSESCLIEKLANSLLEHLQA--RRPIKARTAFPIYL 149


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 155 WYVTNMKIAVLRSSVCLGQ-LSSEMAYKTASFFNRFD 262
           + V+   +  +   +C GQ   S++ Y+T   FN FD
Sbjct: 574 YQVSTGSLQSIPEEICFGQTFPSKLVYRTLQVFNSFD 610


>AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical
           protein Y71G12B.26 protein.
          Length = 409

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 125 LQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEM 226
           L   V H  +     M + V  +++C+G+LSS++
Sbjct: 296 LYLAVFHDLIHLFIGMPVQVAAATICIGELSSQL 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,398,325
Number of Sequences: 27780
Number of extensions: 186244
Number of successful extensions: 350
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)