Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0944
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   1.1  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    24   3.5  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    24   3.5  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 278 HLFFIYTKITIALNTDGCHRRHPRRYVSEFXISSCSTCKW*CTESRG 138
           HL+ + +KI+     DG     P  +   F  +SCS  K    E+ G
Sbjct: 687 HLYILQSKISQQFQNDGIFACIPIMFGERFYKASCSEIKLSYIENSG 733


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 84  RSKQRLIFKSIKVFTSAFL*NWYEWF 7
           R + +L+     +FTSAF+ NW + F
Sbjct: 91  RRESKLVSHVCSLFTSAFVFNWPKHF 116


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 272 FFIYTKITIALNTDGCHRRHPRRYVSEFXISSCS 171
           F  Y ++   L  D  H  H RR++S     +CS
Sbjct: 97  FVAYEQVRRVLIRDPEHETHARRFLSGSLAGTCS 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 853,622
Number of Sequences: 5004
Number of extensions: 9564
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)