Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0944
         (279 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    27   1.5  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    27   1.5  
Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z83105-9|CAB05489.1|  199|Caenorhabditis elegans Hypothetical pr...    25   8.0  
Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical pr...    25   8.0  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 159 PFTRAARRYXKFGNISTRVSS---MTTISVKCNSDFCVN 266
           PF   AR+Y +F   S R  S   +  +   C++D C N
Sbjct: 48  PFNFHARKYLRFARFSRRGCSKCCLLRVQANCSADLCHN 86


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 159 PFTRAARRYXKFGNISTRVSS---MTTISVKCNSDFCVN 266
           PF   AR+Y +F   S R  S   +  +   C++D C N
Sbjct: 48  PFNFHARKYLRFARFSRRGCSKCCLLRVQANCSADLCHN 86


>Z78067-9|CAB01528.2|  450|Caenorhabditis elegans Hypothetical
           protein ZC412.1 protein.
          Length = 450

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 14  SYQFYRNAEVKTLILLNISLCFD 82
           SY  Y +  +KT+++ N++LC D
Sbjct: 158 SYPLYYSQNLKTMVIENVTLCGD 180


>Z83105-9|CAB05489.1|  199|Caenorhabditis elegans Hypothetical
           protein F14H3.9 protein.
          Length = 199

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 10  PFIPILQKR*SENFDTFKY 66
           PFI  L K  S NF+ FKY
Sbjct: 116 PFIACLSKLRSSNFNIFKY 134


>Z49911-9|CAA90133.1|  682|Caenorhabditis elegans Hypothetical
           protein M28.7 protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 259 QKSLLHLTLMVVIDDTRVDMFPNLXYL 179
           +KSL H  L ++IDD  V    N+ YL
Sbjct: 464 EKSLGHTYLRLIIDDKAVPSRTNVLYL 490


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,677,322
Number of Sequences: 27780
Number of extensions: 54506
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)