Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0943
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0585 - 5237547-5237930,5237995-5238072,5238163-5238405,523... 82 3e-16
01_06_0670 + 31069976-31070073,31070461-31070581,31070669-310707... 81 9e-16
01_01_0629 - 4738519-4738607,4738700-4738828,4738921-4739011,473... 76 2e-14
02_05_0228 - 27010982-27011272,27011401-27011506,27011616-270117... 76 2e-14
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 75 3e-14
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026... 63 1e-10
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351... 59 3e-09
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227 29 2.1
08_01_0637 + 5537421-5539547 28 6.5
>05_01_0585 -
5237547-5237930,5237995-5238072,5238163-5238405,
5238515-5238661,5238780-5238863,5238969-5239040,
5239153-5239248,5239345-5239410,5239537-5239642,
5239749-5239900,5240238-5240433,5240791-5240879
Length = 570
Score = 82.2 bits (194), Expect = 3e-16
Identities = 45/85 (52%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITILIKXHI*YF 527
+LQ+RNE+LF+ LL ++E+ +P+VYTPTVG ACQK+G +YRRP+GLYI++ K I
Sbjct: 93 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKI--L 150
Query: 528 EEL-GQSMLSAQ*FLQT-GERILGL 596
E L S Q + T GERILGL
Sbjct: 151 EVLKNWPERSIQVIVVTDGERILGL 175
>01_06_0670 +
31069976-31070073,31070461-31070581,31070669-31070743,
31070863-31071014,31071171-31071276,31071409-31071474,
31071562-31071657,31071764-31071835,31071925-31072008,
31072147-31072245,31072721-31072768,31072857-31072910,
31072991-31073089,31073182-31073271,31073371-31073448,
31073584-31073658,31073806-31073896,31074014-31074142,
31074235-31074323
Length = 573
Score = 80.6 bits (190), Expect = 9e-16
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITILIKXHI*YF 527
+LQ+RNE+LF+ LL ++E+ +P+VYTPTVG ACQK+G ++RRP+GLYI++ K I
Sbjct: 96 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGRI--L 153
Query: 528 EEL-GQSMLSAQ*FLQT-GERILGL 596
E L S Q + T GERILGL
Sbjct: 154 ELLRNWPEKSIQVIVVTDGERILGL 178
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 83 GLQPKYLDQRRNMHE-ITGNIICPNMLRGIDHIKDPRLNKGLAFTLEE 223
G++ Y + R + IT +C + G ++DPR NKGL+FT +E
Sbjct: 8 GVEDAYGEDRATEDQPITPWAVC--VASGHSLLRDPRHNKGLSFTEKE 53
>01_01_0629 -
4738519-4738607,4738700-4738828,4738921-4739011,
4739103-4739177,4739529-4739618,4739742-4739840,
4739934-4739987,4740084-4740131,4740232-4740330,
4740458-4740541,4740650-4740721,4740812-4740907,
4741012-4741077,4741148-4741253,4741350-4741501,
4741634-4741708,4741792-4741912,4742968-4743209,
4743328-4743381
Length = 613
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITILIKXHI*YF 527
+LQ+RNE+LF+ LL ++E+ +P+VYTPTVG ACQK+G ++R+P+GLY+++ K +
Sbjct: 162 DLQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRQPQGLYVSLKDKGKVLDV 221
Query: 528 EELGQSMLSAQ*FLQTGERILGL 596
+ GERILGL
Sbjct: 222 LRNWPERNIQVIVVTDGERILGL 244
>02_05_0228 -
27010982-27011272,27011401-27011506,27011616-27011767,
27011919-27011930
Length = 186
Score = 75.8 bits (178), Expect = 2e-14
Identities = 38/83 (45%), Positives = 54/83 (65%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITILIKXHI*YF 527
E +R+E+LF+ LL ++E+ +P+VYTPTVG ACQK+G +YRRP+GLYI++ K I
Sbjct: 2 EKGERSERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKDKGKILEV 61
Query: 528 EELGQSMLSAQ*FLQTGERILGL 596
+ + GERILGL
Sbjct: 62 LKNWPERSIQVIVITDGERILGL 84
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 75.4 bits (177), Expect = 3e-14
Identities = 42/85 (49%), Positives = 58/85 (68%), Gaps = 2/85 (2%)
Frame = +3
Query: 348 ELQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYITILIKXHI*YF 527
+LQ+ NE+LF+ LL ++E+ +P+VYTPTVG ACQK+G ++ RP+GLYI++ K I
Sbjct: 116 DLQEGNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFSRPQGLYISLKEKGKI--L 173
Query: 528 EEL-GQSMLSAQ*FLQT-GERILGL 596
E L S Q + T GERILGL
Sbjct: 174 EVLKNWPERSIQVIVVTDGERILGL 198
>10_08_0551 +
18702081-18702251,18702328-18702424,18702533-18702651,
18702757-18702924,18703296-18703424,18703659-18703719,
18703813-18703916,18704173-18704279,18704319-18704493,
18704657-18704770,18704883-18704966,18705536-18705608,
18705689-18705775,18705863-18705917,18706007-18706078,
18706470-18706532,18706640-18706754,18706844-18706915
Length = 621
Score = 63.3 bits (147), Expect = 1e-10
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +3
Query: 351 LQDRNEKLFFSLLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYIT 497
L DRNE L++ +L +I+ F PI+YTPTVGL C+ + ++RRPRG+Y +
Sbjct: 119 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCENYSGLFRRPRGMYFS 167
>07_03_0474 +
18534071-18534238,18534349-18534445,18534992-18535122,
18535191-18535286,18535459-18535464,18535521-18535688,
18535892-18536020,18536613-18536673,18536928-18537031,
18537137-18537220,18538433-18538461,18538506-18538617,
18539200-18539313,18539767-18539832,18540237-18540309,
18540396-18540482,18540710-18540764,18540869-18540940,
18541039-18541101,18541177-18541294,18541377-18541451
Length = 635
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 3/52 (5%)
Frame = +3
Query: 351 LQDRNEKLFFS---LLDCDIEKFMPIVYTPTVGLACQKFGLVYRRPRGLYIT 497
L DRNE +++ L+D +IE+ PIVYTPTVGL CQ + ++RRPRG+Y +
Sbjct: 154 LHDRNETMYYKAEVLID-NIEEHAPIVYTPTVGLVCQNYSGLFRRPRGMYFS 204
>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
Length = 1000
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -1
Query: 592 PNILSPVCKNYCADSMLWPSSSKYQICXLIRIVIYNPLGLL*TRPNFWHAN 440
P+ L +C +YC D W S + L+R++I + + + W +N
Sbjct: 909 PSTLQSLCLSYCGDISPWVPSCLENLASLVRLLINSCQHVQYIPSSLWSSN 959
>08_01_0637 + 5537421-5539547
Length = 708
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -1
Query: 325 KSSSYLSNEIWQNSNCSSWVLNLGPKVREYLKLXLFEREG 206
K + ++ E W N+ SW + + ++E L + EREG
Sbjct: 395 KMARWMGVEDWWNTKAYSWPIPVSECIQELLVNQVLEREG 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,823,445
Number of Sequences: 37544
Number of extensions: 257595
Number of successful extensions: 547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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