Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0936
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    28   0.94 
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   6.6  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   6.6  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    25   8.8  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.8  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    25   8.8  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   8.8  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   8.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.8  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 334 QAYLNQKKLDAEAKLLHQGAINFSKQTSNG*LLWKISAVLSKK 206
           +AYL+  K+D +A L  QG  N  + T +   L KI+ +L+ K
Sbjct: 57  EAYLDAIKIDEKAVLAWQGLWNLYESTHDISELHKITPILASK 99


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 250 CWFVWKNLLHLGVKVLLPHLTFSD 321
           C F+   +L+LG+ V++ HL   D
Sbjct: 37  CTFLLSTILYLGIAVIMSHLCVFD 60


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 238 RVNHCWFVWKNLLHLGVKVLLPHLTFSDLNRLEQHRHLNDLPMLVL 375
           R NH W V K +  LG   L+P L+F  L  L+    + D+   VL
Sbjct: 155 RSNHEWLVAKPIGRLGGPGLIP-LSFIQLRDLKTGAVIKDVSEAVL 199


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 348 MSVLLKPI*IRKS*MRKQNFYTKVQ*IFPNKPAMVDSCGKFQQCSQR 208
           + +LLKPI   +  M  +  +T +  IFP+ P+ +    +  Q S+R
Sbjct: 433 IQILLKPIYPGQLHMLGKQLHTVIYPIFPSSPSSLPLLSELIQFSRR 479


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -2

Query: 236  VENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQEKPSSS 99
            +E F     +I ++   +R  END + +   ++  +EKA ++P+ S
Sbjct: 1021 LEKFDKISDQILEIAMQSRK-ENDGRTLKQVIQLTFEKATDEPNFS 1065


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 518 RXITYHTINPRVQTIQAKWQNIYSTMGIMINSI 616
           R +TY  +  R+ T +A +  + S MG+ + S+
Sbjct: 125 RGLTYDFVGQRLLTSRASFSQVASFMGVCVWSV 157


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 436 AAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQK 314
           A  +VVQE          NDL ++L + LN  + +  +N+K
Sbjct: 677 AVNKVVQEDILFAIDNVYNDLAESLHEQLNAYIQRKKINKK 717


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 302 GSKTFTPRCNKFFQTNQQWLTLVENFSSALKEIGDVENWARS 177
           G+  F P C K     Q+WL+L + +S +      +  W  +
Sbjct: 130 GTSIFNPVCVKRKILQQEWLSLNQRYSDSWPSKITLPKWVHA 171


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 208 SLRALLKFSTRVNHCWFVWKNLLHLGVKVLL 300
           S R L  FST VN   F++KNL+  G++ L+
Sbjct: 480 SPRDLSSFSTSVNDGSFLFKNLM-FGLRALM 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,681
Number of Sequences: 5004
Number of extensions: 41765
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)