Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0936
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0073 - 572794-572883,573188-573393,573491-573581                 41   7e-04
12_01_0074 - 615794-615883,616186-616391,616524-616614                 39   0.003
12_02_0049 + 12890684-12890876,12891160-12891176                       30   1.7  
04_03_0661 - 18468244-18469580,18469610-18469619                       28   5.2  
05_03_0343 + 12732673-12732792,12732903-12733091,12733220-127333...    27   9.0  

>11_01_0073 - 572794-572883,573188-573393,573491-573581
          Length = 128

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 272 KFFQTNQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLERAYE 126
           +F +   QWL      +S LKEIGD ENW + ++ D K I   +   ++
Sbjct: 79  RFKKQTDQWLAATNAINSVLKEIGDFENWMKIMDFDCKSINAAIRNIHQ 127



 Score = 35.1 bits (77), Expect = 0.045
 Identities = 17/68 (25%), Positives = 36/68 (52%)
 Frame = -3

Query: 457 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 278
           + H  +   +R   E+ + + + +A  +   LV  ++ GV + Y+N+++++ EA+ L   
Sbjct: 17  QRHHHQSLHQRNKTERVKVDAVKSAARVADLLVATVDGGVQELYINERRIEFEARALLAT 76

Query: 277 AINFSKQT 254
              F KQT
Sbjct: 77  IARFKKQT 84


>12_01_0074 - 615794-615883,616186-616391,616524-616614
          Length = 128

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 272 KFFQTNQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLERAY 129
           ++ +   QWL      +S LKEIGD ENW + ++ D K I   +   +
Sbjct: 79  RYKKQTDQWLAATNAINSVLKEIGDYENWMKIMDFDCKSINAAIRNIH 126



 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/68 (20%), Positives = 36/68 (52%)
 Frame = -3

Query: 457 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 278
           + H      +R + ++++ + + +A  +   LV  ++ G  + Y+N+++++ EA+ L   
Sbjct: 17  QRHHHHSLHQRKITDREKIDAVRSAARVADLLVATVDGGAQELYINERRIEIEARALLAT 76

Query: 277 AINFSKQT 254
              + KQT
Sbjct: 77  IARYKKQT 84


>12_02_0049 + 12890684-12890876,12891160-12891176
          Length = 69

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -3

Query: 400 ECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQT 254
           + + +A  +   LV  ++ GV + Y+N+K+++ EA+ L      + KQT
Sbjct: 2   DAVRSAARVADLLVATVDGGVQELYINEKRIELEARALLATIAWYRKQT 50


>04_03_0661 - 18468244-18469580,18469610-18469619
          Length = 448

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -3

Query: 454 EHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKL-DAEAKLLHQ 281
           E Q ++ AK + ++ + +E   AA +  +   +      A+A LNQKKL + E KLL +
Sbjct: 92  EKQRRKEAKYLAKKMQEEEAARAAEEERKRKEEEAK-RAAEAALNQKKLKEKEKKLLRK 149


>05_03_0343 +
           12732673-12732792,12732903-12733091,12733220-12733387,
           12733468-12733522,12733646-12733704,12734784-12734909,
           12737281-12737409,12737486-12737540,12737633-12737808,
           12737903-12737986,12738602-12738625
          Length = 394

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 358 DHLNVGVAQAYLNQKKLDAEAKLLHQGAIN 269
           D ++ GV  A LN+ +   E K+LH GAI+
Sbjct: 24  DFISYGVGDAVLNELQALWEMKMLHCGAIS 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,303,057
Number of Sequences: 37544
Number of extensions: 221771
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)