Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0936
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       31   0.57 
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   3.0  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               29   4.0  
SB_32883| Best HMM Match : K-box (HMM E-Value=0.032)                   27   9.2  

>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -2

Query: 230 NFSSALKEIGDVENWARSIENDMK-IITDTLERAYE 126
           +FS+ L   G+VE+W   +EN M+  + DTL +A E
Sbjct: 479 DFSTDLYPTGNVEDWLLEVENTMRNSLRDTLRKALE 514


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 297  QNFYTKVQ*IFPNKPAMVDSCGKFQQCSQRNWGCRKLGT 181
            +++Y+ V+ I   K A  D C   Q   QRN+G R LGT
Sbjct: 2359 RDYYSMVKCIGNRKDA--DECNAIQVALQRNFGGRSLGT 2395


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 317  EKVRCGSK-TFTPRCNKFFQTNQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTL 141
            E VRC S   F PRC K     +   T +  FS A  E     ++ R +EN  KI  + L
Sbjct: 1457 ESVRCLSDCVFLPRCVKPMSLERIVSTQLHCFSDASNEGYGAVSYLRIVENQGKISCNIL 1516


>SB_32883| Best HMM Match : K-box (HMM E-Value=0.032)
          Length = 192

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 352 LNVGVAQAYLNQKKLDAEAKLLHQGA 275
           L+  +AQ+ + Q+ L+ EAK LHQ A
Sbjct: 38  LDYSIAQSNVRQQSLNCEAKKLHQQA 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,853
Number of Sequences: 59808
Number of extensions: 289135
Number of successful extensions: 745
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)