Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0936
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-8|CAA83011.1|  129|Caenorhabditis elegans Hypothetical pr...    72   3e-13
Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    29   3.5  
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    29   3.5  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z30423-8|CAA83011.1|  129|Caenorhabditis elegans Hypothetical
           protein T20G5.10 protein.
          Length = 129

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 36/68 (52%), Positives = 44/68 (64%)
 Frame = -3

Query: 457 KEHQAKQAAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQG 278
           KEH  KQ  +R VQE+ + E I AA  L+ A+VDHLN  VAQAY NQK+LD EAK     
Sbjct: 3   KEHSKKQHLRREVQEKLKNEAIVAAQTLSTAVVDHLNAKVAQAYGNQKRLDVEAKRFENN 62

Query: 277 AINFSKQT 254
           +   +KQT
Sbjct: 63  SAALAKQT 70



 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 33/83 (39%), Positives = 50/83 (60%)
 Frame = -2

Query: 374 NTSIGRSFKCRCCSSLFKSEKVRCGSKTFTPRCNKFFQTNQQWLTLVENFSSALKEIGDV 195
           +T++      +   +    +++   +K F        +  +QWL + E  + ALKEIGDV
Sbjct: 31  STAVVDHLNAKVAQAYGNQKRLDVEAKRFENNSAALAKQTEQWLFITEGLNYALKEIGDV 90

Query: 194 ENWARSIENDMKIITDTLERAYE 126
           ENW+++IENDMKIIT+TL RAYE
Sbjct: 91  ENWSKTIENDMKIITETLRRAYE 113


>Z93373-2|CAN99669.1| 1671|Caenorhabditis elegans Hypothetical
           protein C01B9.1b protein.
          Length = 1671

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 256 FVWKNLLHLGVKVLLPH-LTFSDLNRLEQHRHLNDLPML 369
           F  ++  HLG+  ++ H ++F DL  L++H   +D+P +
Sbjct: 520 FARRDFGHLGIAKIIAHPISFEDLTFLKEHFITSDIPQM 558


>Z93373-1|CAB07551.1| 1601|Caenorhabditis elegans Hypothetical
           protein C01B9.1a protein.
          Length = 1601

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 256 FVWKNLLHLGVKVLLPH-LTFSDLNRLEQHRHLNDLPML 369
           F  ++  HLG+  ++ H ++F DL  L++H   +D+P +
Sbjct: 450 FARRDFGHLGIAKIIAHPISFEDLTFLKEHFITSDIPQM 488


>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 254  QQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLE 138
            QQ   L EN     +  GD+E   R +E D+K+  + ++
Sbjct: 1042 QQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENID 1080


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 254  QQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLE 138
            QQ   L EN     +  GD+E   R +E D+K+  + ++
Sbjct: 1042 QQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENID 1080


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -2

Query: 296 KTFTPRCNKFFQTNQQWLTLVENFSSALKEIGDVENWARSIENDMKIITDTLERAYEKAQ 117
           K    R     Q N+Q  TL  N+S   +++     +  S  N  ++ T  L R  E+  
Sbjct: 58  KLIIERLEDVKQRNKQTATLYNNYSKLAEQLEKKHKYGTSSSNSSQLETGELARVKEEMA 117

Query: 116 E 114
           E
Sbjct: 118 E 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,484,344
Number of Sequences: 27780
Number of extensions: 233302
Number of successful extensions: 752
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)