Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0935
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0308 + 2434642-2434736,2435176-2435245,2435435-2435566,243...    39   0.003
02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990,106...    29   1.8  
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    29   3.1  
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686     29   3.1  
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    27   9.5  

>05_01_0308 +
           2434642-2434736,2435176-2435245,2435435-2435566,
           2435659-2435722,2435786-2435855,2435952-2436036,
           2437572-2437628,2437894-2438010,2438267-2438337,
           2438703-2439045
          Length = 367

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -1

Query: 364 KMLDWNEIT--DLPNKRPDVILGADIVYDPSILKPLCNV 254
           K L W E +  DL + RPD++LGADI+YDP  +  L  V
Sbjct: 234 KYLSWEETSESDLWDCRPDLVLGADIIYDPVCVPHLIRV 272


>02_01_0151 +
           1067067-1067222,1067586-1067690,1067904-1067990,
           1068071-1068121,1068265-1068291,1068292-1068385,
           1068610-1068845
          Length = 251

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -1

Query: 355 DWNEIT-DLPNKRPDVILGADIVYD 284
           +W+E T DL    PDVILGAD++YD
Sbjct: 150 EWDEPTFDL---HPDVILGADVLYD 171


>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 137 HNENYRFPKLVKNFQRLTHFL*YWRYKCSRH 229
           +N N R+ KLVK  +RL ++L Y++ K  RH
Sbjct: 234 YNAN-RYAKLVKKKERLQNWLDYYQLKFERH 263


>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
          Length = 959

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 270 FSIEGSYTISAPSITSGLLFGRSVISFQSNIL 365
           F  E   T+SAP++  G++FG+ +   +S ++
Sbjct: 301 FKCEFDLTLSAPTVEQGMVFGKELFGQESGLV 332


>04_04_1193 +
           31634043-31634349,31634685-31634847,31635048-31636622,
           31636653-31637541,31639401-31641266
          Length = 1599

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 399 PAVPE-ISNSTNIV*FICCAIKNRFSSVINIKLETEYQELVNFK 527
           P +PE I+N  ++   +  A K  +SS+ NI   T  QEL NFK
Sbjct: 723 PNIPEEINNLVSLQHLV--AQKGVWSSIANIGEMTSLQELTNFK 764


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,890,508
Number of Sequences: 37544
Number of extensions: 220186
Number of successful extensions: 510
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)