BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0935 (538 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 05_01_0308 + 2434642-2434736,2435176-2435245,2435435-2435566,243... 39 0.003 02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990,106... 29 1.8 10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 29 3.1 08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 29 3.1 04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 27 9.5 >05_01_0308 + 2434642-2434736,2435176-2435245,2435435-2435566, 2435659-2435722,2435786-2435855,2435952-2436036, 2437572-2437628,2437894-2438010,2438267-2438337, 2438703-2439045 Length = 367 Score = 38.7 bits (86), Expect = 0.003 Identities = 19/39 (48%), Positives = 25/39 (64%), Gaps = 2/39 (5%) Frame = -1 Query: 364 KMLDWNEIT--DLPNKRPDVILGADIVYDPSILKPLCNV 254 K L W E + DL + RPD++LGADI+YDP + L V Sbjct: 234 KYLSWEETSESDLWDCRPDLVLGADIIYDPVCVPHLIRV 272 >02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990, 1068071-1068121,1068265-1068291,1068292-1068385, 1068610-1068845 Length = 251 Score = 29.5 bits (63), Expect = 1.8 Identities = 15/25 (60%), Positives = 19/25 (76%), Gaps = 1/25 (4%) Frame = -1 Query: 355 DWNEIT-DLPNKRPDVILGADIVYD 284 +W+E T DL PDVILGAD++YD Sbjct: 150 EWDEPTFDL---HPDVILGADVLYD 171 >10_08_1052 - 22567937-22568329,22568436-22568669,22568787-22569111, 22569239-22569484,22569576-22569916,22570070-22570150, 22570275-22570394,22570549-22570650,22570900-22571035, 22571210-22571362,22572605-22572906 Length = 810 Score = 28.7 bits (61), Expect = 3.1 Identities = 14/31 (45%), Positives = 21/31 (67%) Frame = +2 Query: 137 HNENYRFPKLVKNFQRLTHFL*YWRYKCSRH 229 +N N R+ KLVK +RL ++L Y++ K RH Sbjct: 234 YNAN-RYAKLVKKKERLQNWLDYYQLKFERH 263 >08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 Length = 959 Score = 28.7 bits (61), Expect = 3.1 Identities = 10/32 (31%), Positives = 20/32 (62%) Frame = +3 Query: 270 FSIEGSYTISAPSITSGLLFGRSVISFQSNIL 365 F E T+SAP++ G++FG+ + +S ++ Sbjct: 301 FKCEFDLTLSAPTVEQGMVFGKELFGQESGLV 332 >04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622, 31636653-31637541,31639401-31641266 Length = 1599 Score = 27.1 bits (57), Expect = 9.5 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +3 Query: 399 PAVPE-ISNSTNIV*FICCAIKNRFSSVINIKLETEYQELVNFK 527 P +PE I+N ++ + A K +SS+ NI T QEL NFK Sbjct: 723 PNIPEEINNLVSLQHLV--AQKGVWSSIANIGEMTSLQELTNFK 764 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,890,508 Number of Sequences: 37544 Number of extensions: 220186 Number of successful extensions: 510 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 500 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 509 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1186491600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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