Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0935
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    36   0.014
AF106581-6|ABC48242.1|  386|Caenorhabditis elegans Hypothetical ...    29   2.1  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    29   2.8  
Z22178-6|CAA80158.2|  265|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -1

Query: 367 VKMLDWNEITDLPNKRP-DVILGADIVYDPSILKPLCNV 254
           V+ L+W +      K P D+I+ AD+VYD ++L  LCNV
Sbjct: 249 VRSLNWCDFDFSEWKEPTDLIIAADVVYDTALLASLCNV 287


>AF106581-6|ABC48242.1|  386|Caenorhabditis elegans Hypothetical
           protein VC5.6 protein.
          Length = 386

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 485 IYH*TKTIFDGTTYELDNVSRVANLWNGWTDFDGTFTDRC*DVRL 351
           +Y+ T+ +   T+Y LD VSR+ + +  W DF  T  D   D +L
Sbjct: 235 VYY-TRHLCTPTSYSLDEVSRIFSPY--WADFRKTLVDPVIDAKL 276


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 209 ASIIRNELTFESFLQVL--ETYNFHCEKLMQPTNXHIEWDHT 90
           A +I NE T E F   +  ET     EK   PT   I W+HT
Sbjct: 778 ADLIWNEKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT 819


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 209 ASIIRNELTFESFLQVL--ETYNFHCEKLMQPTNXHIEWDHT 90
           A +I NE T E F   +  ET     EK   PT   I W+HT
Sbjct: 778 ADLIWNEKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT 819


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 209 ASIIRNELTFESFLQVL--ETYNFHCEKLMQPTNXHIEWDHT 90
           A +I NE T E F   +  ET     EK   PT   I W+HT
Sbjct: 778 ADLIWNEKTREEFRHAMDTETRALISEKEQAPTGLPIAWNHT 819


>Z22178-6|CAA80158.2|  265|Caenorhabditis elegans Hypothetical
           protein F54C8.6 protein.
          Length = 265

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 225 VIFSVTEYFQTLQSGFSIEGS-YTISAPSITSGLLFG 332
           +  +++E+FQT+  GF++ G+ +T     ++  + FG
Sbjct: 170 MFITISEFFQTISKGFTVFGTLFTAIWHGLSENVFFG 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,403,988
Number of Sequences: 27780
Number of extensions: 234616
Number of successful extensions: 596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)