Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0935
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.6  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   6.0  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.0  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 1   ENSSRVFF-FFFLSQNPFYFLMIFSKHRLI 87
           + +SR+ F  FFL+ N FY+    S+   I
Sbjct: 424 DRASRIVFPLFFLAINVFYWFAYLSRSERI 453


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 261 QSGFSIEGSYTISAPSI 311
           ++GF ++GS+  +AP I
Sbjct: 93  ENGFQVQGSHIPTAPPI 109


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -3

Query: 464 IFDGTTYELDNVSRVANLWNGWTDFDGTF 378
           +F     +L +V++  N WN W +    +
Sbjct: 681 LFKDEAKDLVSVNKSWNKWNDWQETQNNY 709


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -3

Query: 464 IFDGTTYELDNVSRVANLWNGWTDFDGTF 378
           +F     +L +V++  N WN W +    +
Sbjct: 681 LFKDEAKDLVSVNKSWNKWNDWQETQNNY 709


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -3

Query: 464 IFDGTTYELDNVSRVANLWNGWTDFDGTF 378
           +F     +L +V++  N WN W +    +
Sbjct: 681 LFKDEAKDLVSVNKSWNKWNDWQETQNNY 709


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,657
Number of Sequences: 438
Number of extensions: 2904
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)