Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0933
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.06c |swi1||replication fork protection complex subunit S...    29   0.68 
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    27   1.6  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    27   2.7  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   8.4  

>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +1

Query: 313 KITVKKRLLVFYFIIDLSWMLNKNVFKH*FFSSTNASR 426
           +I VK++  V+ + +D   +L+K    H +FS+TN++R
Sbjct: 598 RIFVKQKCHVYLYRLDFLRVLDKMFNDHVYFSTTNSAR 635


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 176 AEDRNTDYLHKWIIKTV*DLYGRVLA 99
           A D N DY H W   TV D +G+V+A
Sbjct: 251 ARDMNADY-HSWGHSTVVDPFGKVIA 275


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 204 IYRRFALKGLKTMLLN*AANVEFVNPMTLVTKK 302
           I  RFA   L T LLN    +E+ NP T V KK
Sbjct: 761 IGHRFA--SLITKLLNVTFGIEYFNPKTTVNKK 791


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +3

Query: 63  CILTYQKLYTCAR*NTSVQVLYCFYNPFV*IVGIPIFRTV*RTNRASIYRRFALKGLKT 239
           C+ T   L TC +   S   L  F   ++   G PIFR V R NR  +     +  ++T
Sbjct: 512 CLSTSHFLKTCEK--ASHMRLDVFAQQWIYGYGYPIFRVVQRFNRKKMIIEMGIDQVQT 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,263
Number of Sequences: 5004
Number of extensions: 36472
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)