Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0930
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   2.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    27   2.4  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    26   4.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.5  

>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 376 QLDPRSGLARQGPRR-LSR*VPRLHPSRPAER 468
           QLDPR+ L  Q PRR LSR   RL    P  R
Sbjct: 205 QLDPRTMLQLQWPRRQLSRLCKRLSLKEPVYR 236


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 511  QQLKKSEAKDGREMQESRNND 573
            +Q K + AKD  EMQES+N +
Sbjct: 1049 KQKKLNNAKDAHEMQESKNEE 1069



 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 369 FGAPFPLPLPCQKSRVDILELVLPLFDPFAPYSISL 262
           F   F  PLP +++R+ ILE+    F P  P S  L
Sbjct: 536 FDREFYFPLPNKQARMKILEINSLHFSPKIPESYLL 571


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 631 NWYIILFETWFLYGNTVHRYRYFDFL 554
           NWY ++   ++ YG +++ Y +  F+
Sbjct: 112 NWYFLMTTLYYAYGESIYAYFHHLFI 137


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 567 ISTFLHFAPIFRFGLLXLLWNC--SFLIASLTTSMPFGWSTWVQPRNLT 427
           IS F  F  +F   +   +WN   S++  +L+    F W TW++P + T
Sbjct: 259 ISPFRFFLYVF---IASFIWNWFPSYIFQALSL---FAWVTWIRPNSPT 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,837
Number of Sequences: 5004
Number of extensions: 47620
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)