Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0930
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)               85   7e-17
SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20)                    85   7e-17
SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)                    36   0.023
SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)                 31   1.1  
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   29   2.6  
SB_40717| Best HMM Match : Lon_C (HMM E-Value=3.4e-31)                 29   3.4  
SB_53540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  28   7.9  

>SB_27365| Best HMM Match : PID (HMM E-Value=1.90001e-40)
          Length = 837

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 42/101 (41%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
 Frame = +2

Query: 317 MSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIK 496
           MST+L W  K KG     G+ W+HAP+SL +  V Y VKF G T+V + KG EV+K+AI 
Sbjct: 1   MSTVLKWASK-KGK-QQEGKQWLHAPESLTQAAVLYTVKFYGVTEVAEAKGTEVIKEAIT 58

Query: 497 KLQFHSN-XRSPKRKMGAKCKKVEITISVDGVAIQEPRFEQ 616
           K+QF ++  +S      +K +KV++ I++DGV+I++ + ++
Sbjct: 59  KVQFANHIKKSEAGTKASKLRKVDLKINIDGVSIEDSKSKE 99


>SB_9817| Best HMM Match : PID (HMM E-Value=1.2e-20)
          Length = 144

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 42/101 (41%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
 Frame = +2

Query: 317 MSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIK 496
           MST+L W  K KG     G+ W+HAP+SL +  V Y VKF G T+V + KG EV+K+AI 
Sbjct: 1   MSTVLKWASK-KGK-QQEGKQWLHAPESLTQAAVLYTVKFYGVTEVAEAKGTEVIKEAIT 58

Query: 497 KLQFHSN-XRSPKRKMGAKCKKVEITISVDGVAIQEPRFEQ 616
           K+QF ++  +S      +K +KV++ I++DGV+I++ + ++
Sbjct: 59  KVQFANHIKKSEAGTKASKLRKVDLKINIDGVSIEDSKSKE 99


>SB_4695| Best HMM Match : SAM_1 (HMM E-Value=0.012)
          Length = 1348

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 380  WIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQ 505
            W H P+ L+KG V Y  ++LG   V +  G+    DA +K++
Sbjct: 1307 WHHEPEVLLKGSVNYTTQYLGSHMVKEISGVTSTIDACRKMR 1348


>SB_36289| Best HMM Match : RNA_pol_N (HMM E-Value=1.9)
          Length = 857

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +1

Query: 448 PSRPAERHRGGQRCNQETTVPQQLKKSEAKDGREMQESRNN 570
           P+RP  R R  +R  +   +P+    +EA+DG E + + +N
Sbjct: 444 PTRPGNRERPKKRPTKYQRIPENRVWTEARDGEETKVTEDN 484


>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 26/109 (23%), Positives = 49/109 (44%)
 Frame = +2

Query: 281 ANGSKSGKTNSRMSTLLFWQGKGKGNGAPNGRNWIHAPDSLVKGHVAYLVKFLGCTQVDQ 460
           ++  KSGKT  +         K K +  P G++     +      V +  K LG  +V  
Sbjct: 2   SSAEKSGKTKIKKGP----PAKSKPS-TPKGKDAPLNEEKFRGDGVHFKCKLLGLKEVSG 56

Query: 461 PKGIEVVKDAIKKLQFHSNXRSPKRKMGAKCKKVEITISVDGVAIQEPR 607
           P+G  +  DAIKKL      +   ++ G   +K+ + +++ G+ I + +
Sbjct: 57  PRGDTICIDAIKKL------KQQIKQTGEHKQKIIMAVNLRGIRILDEK 99


>SB_40717| Best HMM Match : Lon_C (HMM E-Value=3.4e-31)
          Length = 255

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 479 VKDAIKKLQFHSNXRSPKRKMGAKCKKVEITISVDGVAIQE 601
           +KD I      +  RS +RK+GA C+ V + ++   +A ++
Sbjct: 16  IKDIISHYTREAGVRSLERKLGAVCRAVAVKVAESSMAAEK 56


>SB_53540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 476 VVKDAIKKLQFHSNXRSPKRKMGAKCKKVEITISVDGVAIQEPRFEQYNVPV 631
           VV+D I +L  HSN        G             G+ I +P  E Y+VPV
Sbjct: 46  VVRDVINRLSTHSNTGDEDEDEGPP--------PYPGIVINQPELESYSVPV 89


>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 448 PSRPAERHRGGQRCNQETTVPQQLKKSEAKDGRE 549
           P+RP  R R  +R  +   +P+    +EA+DG E
Sbjct: 660 PTRPGNRERPKKRPTKYQRIPENRVWTEARDGEE 693


>SB_24641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 451 SRPAERHRGGQRCNQETTVPQQLKKSEAKDGREMQESRNND 573
           S P +  +G Q   Q  + P+Q +K +  DG+   ES+ ++
Sbjct: 420 SEPKQSEKGKQGDGQPASEPKQSEKGKLGDGQPASESKQSE 460


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 422  YLVKFLGCTQVDQPKGIEVVKDAIKKL 502
            +  KF+G T V++P G++++  AI K+
Sbjct: 1515 FTAKFVGSTDVNKPTGMDMLNKAISKV 1541


>SB_15460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 367 ERPQLDPRSGLARQGPRRLSR*VPRL---HPSRP 459
           +RPQL P  G   Q P  +S  VP+    HP +P
Sbjct: 273 QRPQLPPVGGFPGQAPPHMSTHVPQAGFPHPDQP 306


>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 9   YHHH*NNINNSWPSLVQVRTSAEAV 83
           Y H+  +INN+WP+  + R S + +
Sbjct: 94  YRHYGGSINNAWPTFTEKRFSEDCL 118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,148,951
Number of Sequences: 59808
Number of extensions: 400882
Number of successful extensions: 1211
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)