Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0930
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death abno...    76   3e-14
AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate ada...    76   3e-14
Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U80843-14|AAB37960.2|  360|Caenorhabditis elegans Hypothetical p...    29   3.0  
U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein...    28   5.2  
AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe...    28   5.2  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    28   5.2  
AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe6...    28   5.2  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    28   6.9  
AF016423-7|AAB65321.1|  211|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U13644-9|AAB52680.3|  492|Caenorhabditis elegans Cell death
           abnormality protein 6 protein.
          Length = 492

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = +2

Query: 371 GRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFHSN-XRSPKRKMGA 547
           GR WIH PD L+ GHV Y+ +FLGC +  +  G +V ++AI  ++F  +  RS + +  A
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETA 103

Query: 548 KCKKVEITISVDGVAIQE 601
           K +KVEI IS+D V I +
Sbjct: 104 KLQKVEIRISIDNVIIAD 121


>AF061513-1|AAC24362.1|  492|Caenorhabditis elegans candidate
           adaptor protein CED-6 protein.
          Length = 492

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
 Frame = +2

Query: 371 GRNWIHAPDSLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFHSN-XRSPKRKMGA 547
           GR WIH PD L+ GHV Y+ +FLGC +  +  G +V ++AI  ++F  +  RS + +  A
Sbjct: 44  GRTWIHPPDYLINGHVEYVARFLGCVETPKANGSDVAREAIHAIRFQRDLKRSEQTRETA 103

Query: 548 KCKKVEITISVDGVAIQE 601
           K +KVEI IS+D V I +
Sbjct: 104 KLQKVEIRISIDNVIIAD 121


>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 416 VAYLVKFLGCTQVDQP-KGIEVVKDAIKKLQFHSNXRSPKRKMGAKCKKVEITISVDGVA 592
           + +  K++G  ++ +P   IE+V  A++++++    R      G K + V+IT+SVDGV 
Sbjct: 34  IHFEAKYVGSMEIPRPGTRIEIVA-AMRRVRYEFKAR------GIKKRPVDITVSVDGVK 86

Query: 593 IQEPRFEQ 616
           +   R +Q
Sbjct: 87  VVLQRKKQ 94


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
           protein C33G3.1b protein.
          Length = 887

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +2

Query: 416 VAYLVKFLGCTQVDQP-KGIEVVKDAIKKLQFHSNXRSPKRKMGAKCKKVEITISVDGVA 592
           + +  K++G  ++ +P   IE+V  A++++++    R      G K + V+IT+SVDGV 
Sbjct: 34  IHFEAKYVGSMEIPRPGTRIEIVA-AMRRVRYEFKAR------GIKKRPVDITVSVDGVK 86

Query: 593 IQEPRFEQ 616
           +   R +Q
Sbjct: 87  VVLQRKKQ 94


>U80843-14|AAB37960.2|  360|Caenorhabditis elegans Hypothetical
           protein C32B5.4 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 634 GNWYIILFETWFLYGNTVHRYRYF 563
           G+WY+ +F  W  YG  V  Y  F
Sbjct: 279 GSWYMTVFRCWMRYGKKVGTYYTF 302


>U42439-3|AAA83507.1|  310|Caenorhabditis elegans Hypothetical
          protein F19C7.3 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 12 HHH*NNINNSWPSLVQ 59
          +HH  NI N WPSLVQ
Sbjct: 15 NHHEYNIKNPWPSLVQ 30


>AJ345015-1|CAC87812.1|  577|Caenorhabditis elegans FEH-1 protein
           protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 FLGCTQVDQPKGIEVVKDAIKKL 502
           FLG TQV +  GIE++ +A+ +L
Sbjct: 411 FLGVTQVPKATGIEILNEAVDRL 433


>AC025723-11|AAN84832.2|  554|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform c protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 FLGCTQVDQPKGIEVVKDAIKKL 502
           FLG TQV +  GIE++ +A+ +L
Sbjct: 388 FLGVTQVPKATGIEILNEAVDRL 410


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 FLGCTQVDQPKGIEVVKDAIKKL 502
           FLG TQV +  GIE++ +A+ +L
Sbjct: 550 FLGVTQVPKATGIEILNEAVDRL 572


>AC025723-9|AAN84831.1|  640|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform b protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 434 FLGCTQVDQPKGIEVVKDAIKKL 502
           FLG TQV +  GIE++ +A+ +L
Sbjct: 499 FLGVTQVPKATGIEILNEAVDRL 521


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 505  VPQQLKKSEAKDGREMQESRNNDICGRCCHTGT 603
            VP+ + KS   +      S + DI G CC TGT
Sbjct: 1913 VPKTICKSLGLNNERKTISTDKDITGYCCTTGT 1945


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 505  VPQQLKKSEAKDGREMQESRNNDICGRCCHTGT 603
            VP+ + KS   +      S + DI G CC TGT
Sbjct: 1913 VPKTICKSLGLNNERKTISTDKDITGYCCTTGT 1945


>AF016423-7|AAB65321.1|  211|Caenorhabditis elegans Hypothetical
           protein F40A3.1 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 631 NWYIILFETWFLYGNTVHRYRYFDFLAFRAHLSLRT 524
           +W +I   T+   GN V R +++D +A R HLS  T
Sbjct: 57  DWELIGSRTYSWKGNEVLRCKHWDKVAIRWHLSTCT 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,793
Number of Sequences: 27780
Number of extensions: 280360
Number of successful extensions: 918
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)