Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0930
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    28   4.9  
At1g59675.1 68414.m06712 F-box family protein similar to SKP1 in...    28   6.5  
At5g63990.2 68418.m08034 3'(2'),5'-bisphosphate nucleotidase, pu...    27   8.5  
At5g63990.1 68418.m08035 3'(2'),5'-bisphosphate nucleotidase, pu...    27   8.5  
At3g19800.1 68416.m02508 expressed protein                             27   8.5  

>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
           protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/79 (26%), Positives = 33/79 (41%)
 Frame = +2

Query: 398 SLVKGHVAYLVKFLGCTQVDQPKGIEVVKDAIKKLQFHSNXRSPKRKMGAKCKKVEITIS 577
           SLV G V  + + L     ++ +G E V +  K  Q HS           K ++  I  S
Sbjct: 649 SLVGGRVMMVTRLLSLEDTEKQRGYEAVDEIPKHPQNHSTWEE------VKSEREHIKNS 702

Query: 578 VDGVAIQEPRFEQYNVPVP 634
              V ++EP      +P+P
Sbjct: 703 YAEVEMKEPVNLPTTIPIP 721


>At1g59675.1 68414.m06712 F-box family protein similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 164

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/47 (19%), Positives = 26/47 (55%)
 Frame = +3

Query: 474 RWSKMQSRNYSSTATXEVRSERWARNARKSK*RYLWTVLPYRNHVSN 614
           +W++ ++++Y+S     +R      +  +   +Y++T+  Y NH+ +
Sbjct: 114 KWTQYRTKSYTSKMRNSIREVETVGDEVRLSDKYMYTMNVYPNHIES 160


>At5g63990.2 68418.m08034 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 298

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 344 KGKGNGAPNGRNWIHAPDSLVKGHV 418
           +GK  G P GR+WI  P    +G +
Sbjct: 120 RGKSEGGPKGRHWILDPIGGTRGFI 144


>At5g63990.1 68418.m08035 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 357

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 344 KGKGNGAPNGRNWIHAPDSLVKGHV 418
           +GK  G P GR+WI  P    +G +
Sbjct: 120 RGKSEGGPKGRHWILDPIGGTRGFI 144


>At3g19800.1 68416.m02508 expressed protein
          Length = 229

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 248 KQYLGSEIEYGANGSKSGKTNSRMSTLLFWQGKGKGN 358
           K    S I+   NG  S KT  R+ TL   +GK  GN
Sbjct: 33  KHQASSPIQAAINGGGSSKTVKRLITLSPSEGKWNGN 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,470
Number of Sequences: 28952
Number of extensions: 266212
Number of successful extensions: 775
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)