Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0929
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   122   3e-29
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    42   7e-05
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    31   0.17 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    29   0.68 
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    27   2.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   2.1  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   2.7  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   6.3  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   6.3  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   8.4  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   8.4  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   8.4  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  122 bits (295), Expect = 3e-29
 Identities = 56/85 (65%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 QVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINV 435
           QVYEETSG+TVGDPV RTGKPLSVELGPG+  +I+DGIQRPLK I + +QSIYIP+GIN 
Sbjct: 72  QVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPRGINT 131

Query: 436 PSLAREVDWEFNP-LNVKVGSHITG 507
            SL RE  W+F P  ++++G H++G
Sbjct: 132 ESLNREHKWDFTPNKDLRIGDHVSG 156



 Score = 73.3 bits (172), Expect = 2e-14
 Identities = 34/63 (53%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = +2

Query: 68  SKGGLRTIAN-EENEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 244
           +K  +R++ N +E+E R+G +F+VSGPVV A  M G +MYELVRVG+ ELVGE+IR+  D
Sbjct: 8   AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67

Query: 245 MAT 253
             T
Sbjct: 68  KCT 70



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 16/30 (53%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
 Frame = +3

Query: 510 DLYGIVHENTLVK-HRMLVPPKAKGTVTYI 596
           D++G V EN+L   H++++PP+A+GTVTYI
Sbjct: 158 DVFGSVFENSLFNDHKIMLPPRARGTVTYI 187


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +1

Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAR 450
           T G+  G  V+ TG P+S+ +GPG LG I + I  P+ +   +    Y P   + PS   
Sbjct: 113 TEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEE 172

Query: 451 E 453
           +
Sbjct: 173 Q 173


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 235 KTDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDISEPLLILLIGDRP 83
           +T +L  E    DTD+ VHS+S    GS+  S    D  E  +I ++G  P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 368 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 273
           IPS + P    P  T  GFP R    PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -2

Query: 177 ADPDIFSAVTTGPDTAKTYPN 115
           AD  +F AV   PDTAK YPN
Sbjct: 33  ADAVVFKAVGVAPDTAK-YPN 52


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/41 (24%), Positives = 14/41 (34%)
 Frame = -3

Query: 368 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWWWP 246
           + S   P++P         P +      VT       WWWP
Sbjct: 139 VESLFPPQLPDWEKAFHDIPKKEVAHELVTSYFQHVNWWWP 179


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 456 NLPGQGRHVDTLGDVDGLSQLVDVLEGTLNTVKDGTQDTGTKFY*QRLSSTE 301
           +L  Q  HVD     D  S L+ +L   LN       ++G K+Y    SST+
Sbjct: 40  SLSAQQPHVD-----DQRSSLLSLLNAGLNASNQSPSNSGPKYYASHSSSTD 86


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 463 EFNPLNVKVGSHITGEICMVLYTRT 537
           +  P+   + + +TGEIC  +++RT
Sbjct: 568 QIGPVRCTLQNRVTGEICNTVFSRT 592


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 271 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 399
           TS +TVGD V+       + +    LGS++  +++   D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 488 TLTFNGLNSQSTSLAREGTLI 426
           T  FNGL +  TSLA + TL+
Sbjct: 24  TFGFNGLGTSRTSLAPQRTLV 44


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = -3

Query: 563 DQHPVLDQSVLVYNTIQISPV 501
           +Q P+ D+S+++  +I+ISPV
Sbjct: 51  EQEPLFDESIVLGYSIKISPV 71


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 168 DIFSAVTTGPDTAKTYPNLSSFSSLAIVLK 79
           D    +  GP   +T+PN+ S +SLA+  K
Sbjct: 244 DTHLPIKMGPLDVQTHPNIRSIASLALSRK 273


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,538
Number of Sequences: 5004
Number of extensions: 54358
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)