BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= tesS0929 (598 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 25 0.75 DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.3 AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 24 1.3 DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.3 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 3.0 AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 23 3.0 DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 5.3 DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. 21 6.9 AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 21 6.9 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.2 >DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine receptor alpha3subunit protein. Length = 566 Score = 24.6 bits (51), Expect = 0.75 Identities = 9/36 (25%), Positives = 19/36 (52%) Frame = +1 Query: 358 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 465 +DG Q L+ I+E+ + G+++ V+W+ Sbjct: 172 YDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWD 207 >DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 23.8 bits (49), Expect = 1.3 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +1 Query: 346 LGS-IFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 465 LGS +DG + L+ ++E + S + G+++ V+W+ Sbjct: 171 LGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211 >AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic acetylcholine receptoralpha-3 protein. Length = 537 Score = 23.8 bits (49), Expect = 1.3 Identities = 10/36 (27%), Positives = 19/36 (52%) Frame = +1 Query: 358 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 465 ++G Q LK + + S + KGI++ V+W+ Sbjct: 181 YNGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVEWD 216 >DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine receptor alpha4subunit protein. Length = 569 Score = 23.0 bits (47), Expect = 2.3 Identities = 8/36 (22%), Positives = 20/36 (55%) Frame = +1 Query: 358 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 465 +DG + L+ ++E + S + G+++ V+W+ Sbjct: 176 YDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 22.6 bits (46), Expect = 3.0 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = +2 Query: 440 PWPGRLTGNLTH*MLRSGPTSPVRFVWYCTREHS 541 PW +L + + GP +P F C EHS Sbjct: 397 PWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 430 >AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. Length = 238 Score = 22.6 bits (46), Expect = 3.0 Identities = 11/34 (32%), Positives = 15/34 (44%) Frame = +2 Query: 440 PWPGRLTGNLTH*MLRSGPTSPVRFVWYCTREHS 541 PW +L + + GP +P F C EHS Sbjct: 103 PWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 136 >DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. Length = 630 Score = 21.8 bits (44), Expect = 5.3 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +2 Query: 122 YVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMAT 253 Y+F G V A YE+ R +L+ EI+ E D T Sbjct: 407 YLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGT 450 >DQ011226-1|AAY63895.1| 471|Apis mellifera Rh-like protein protein. Length = 471 Score = 21.4 bits (43), Expect = 6.9 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +1 Query: 337 PGILGSIFDGIQRPLKDINELTQSIY 414 PGILG IF + L S+Y Sbjct: 338 PGILGGIFGALMAALATEASYDYSLY 363 >AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. Length = 200 Score = 21.4 bits (43), Expect = 6.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = -2 Query: 177 ADPDIFSAVTTGPDTAKTYPNLSS 106 A+P A TT P TA +LS+ Sbjct: 22 ANPGTIQACTTSPATASLESSLSA 45 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 21.0 bits (42), Expect = 9.2 Identities = 7/8 (87%), Positives = 7/8 (87%) Frame = +3 Query: 234 LKVTWPPP 257 LKVTW PP Sbjct: 993 LKVTWKPP 1000 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 182,380 Number of Sequences: 438 Number of extensions: 4035 Number of successful extensions: 14 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 14 length of database: 146,343 effective HSP length: 55 effective length of database: 122,253 effective search space used: 17482179 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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