Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0924
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    41   8e-04
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    40   0.001
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    38   0.008
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil...    37   0.013
At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    34   0.071
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea...    27   8.1  
At2g26530.1 68415.m03183 expressed protein                             27   8.1  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 627
           KG+P FW    +N  ++SE + E DE  LK L+DIK
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIK 160


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCMKTP 648
           KG+PDFW    +N  + +E + E DE  LK L+DIK   ++ P
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEP 166


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 627
           KG+P FW    +N  ++SE + E DE  L  L+DIK
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIK 159


>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
           protein similar to SP|Q01105|SET protein (HLA-DR
           associated protein II) (PHAPII) (Phosphatase 2A
           inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
           PF00956: Nucleosome assembly protein (NAP)
          Length = 256

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 517 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQCMK 642
           +K IPDFW   F +   L E++ E D+ I K L  + V+  K
Sbjct: 70  IKTIPDFWLTAFLSHPALGELLTEEDQKIFKYLSSLDVEDAK 111


>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 520 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIK 627
           +G+P+FW    +   ML+  + E DE  LK L+DI+
Sbjct: 126 EGVPNFWLIAMKTNEMLANEITERDEAALKYLKDIR 161


>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
           similarity to Swiss-Prot:P24733 myosin heavy chain,
           striated muscle [Aequipecten irradians]
          Length = 342

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 371 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDD 487
           +E N+ +E ++ +R   + E+L + VQN A+   +EKK+D
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKED 236


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 300 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 431
           H+  ++K FTSLF K E             +VS H    + KK+
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,023,970
Number of Sequences: 28952
Number of extensions: 246163
Number of successful extensions: 723
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)