Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0923
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   116   3e-27
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.4  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   9.7  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  116 bits (279), Expect = 3e-27
 Identities = 54/86 (62%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
 Frame = +2

Query: 2   FTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVG 178
           FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+G
Sbjct: 299 FTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIG 358

Query: 179 GLTGVILANSSIDITLHDTYYVVAHF 256
           GLTGVIL+NS +DI  HDTY+VVAHF
Sbjct: 359 GLTGVILSNSVLDIAFHDTYFVVAHF 384



 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 41/85 (48%), Positives = 51/85 (60%)
 Frame = +1

Query: 253 FHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGI 432
           FHYVLS               P   GL  N  +  IQF+ +FIGVNI F PQHFLGL G+
Sbjct: 384 FHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGM 442

Query: 433 PRRYSDYPDSYIS*NIISSLGSYIS 507
           PRR  DYP++++  N +SS+GS IS
Sbjct: 443 PRRIPDYPEAFVGWNFVSSIGSVIS 467



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 579 LNLPSSIEWYPNLPPAEHSYNELP 650
           L +  SIEW  + P  EH++N LP
Sbjct: 510 LGVAQSIEWLLHSPVHEHAFNTLP 533


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +3

Query: 354 KNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRLSRLIYFMKYNFFIRFIYFSLSV 518
           K + F N+ W+ + +    F R     S  ++     Y M +NFF    + +L V
Sbjct: 184 KPNAFKNVLWNSFILLILGFARMFLTKSINYQEHVSEYGMHWNFFFTLGFMALGV 238


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 324 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 452
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 585 LPSSIEWYPNLPPAEHSYNELPILRN 662
           LP +I W P  PP+    NE  + RN
Sbjct: 921 LPETIFWNPERPPSSSIANETFLDRN 946


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 182 LTGVILANSSIDITLHDTYYVV 247
           L  ++LAN+++D T+H  Y+++
Sbjct: 657 LDHILLANATLDKTVHSAYWLM 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,064
Number of Sequences: 5004
Number of extensions: 36347
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)