Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0923
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  122   3e-28
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              83   3e-16
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   3e-06
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   3e-06
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_41084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  122 bits (293), Expect = 3e-28
 Identities = 55/81 (67%), Positives = 70/81 (86%)
 Frame = +2

Query: 14  IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 193
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 194 ILANSSIDITLHDTYYVVAHF 256
           ILANSS+D+ +HDTYYVVAHF
Sbjct: 61  ILANSSLDVVMHDTYYVVAHF 81



 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 44/85 (51%), Positives = 50/85 (58%)
 Frame = +1

Query: 253 FHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGI 432
           FHYVLS              +   TG   N    KI F+ +FIGVNITFFPQHFLGLAG 
Sbjct: 81  FHYVLSMGAVFAIFAGFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGF 140

Query: 433 PRRYSDYPDSYIS*NIISSLGSYIS 507
           PRRYSD+ D Y   N++ S GS IS
Sbjct: 141 PRRYSDFADGYAGWNLVCSFGSTIS 165



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 594 SIEWYPNLPPAEHSYNELPIL 656
           S+EW    PPA H+YNELP +
Sbjct: 199 SLEWVQQSPPALHTYNELPFV 219


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 38/61 (62%), Positives = 43/61 (70%)
 Frame = +1

Query: 325 TGLSLNSYILKIQFFTIFIGVNITFFPQHFLGLAGIPRRYSDYPDSYIS*NIISSLGSYI 504
           TG   N    KI F+ +FIGVNITFFPQHFLGLAG PRRYSD+ D Y   N++ S GS I
Sbjct: 19  TGYCYNELYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTI 78

Query: 505 S 507
           S
Sbjct: 79  S 79



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 594 SIEWYPNLPPAEHSYNELPIL 656
           S+EW    PPA H+YNELP +
Sbjct: 113 SLEWVQQSPPALHTYNELPFV 133


>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +1

Query: 409 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYIS 507
           HFLGLAG PRRYSD+ D Y   N++ S GS IS
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTIS 33



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 594 SIEWYPNLPPAEHSYNELPIL 656
           S+EW    PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +1

Query: 409 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYIS 507
           HFLGLAG PRRYSD+ D Y   N++ S GS IS
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTIS 33


>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +1

Query: 409 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYIS 507
           HFLGLAG PRRYSD+ D Y   N++ S GS IS
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTIS 33



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 594 SIEWYPNLPPAEHSYNELPIL 656
           S+EW    PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +1

Query: 409 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYIS 507
           HFLGLAG PRRYSD+ D Y   N++ S GS IS
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTIS 33



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 594 SIEWYPNLPPAEHSYNELPIL 656
           S+EW    PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +1

Query: 409 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYIS 507
           HFLGLAG PRRYSD+ D Y   N++ S GS IS
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTIS 33



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 594 SIEWYPNLPPAEHSYNELPIL 656
           S+EW    PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +1

Query: 409 HFLGLAGIPRRYSDYPDSYIS*NIISSLGSYIS 507
           HFLGLAG PRRYSD+ D Y   N++ S GS IS
Sbjct: 1   HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTIS 33



 Score = 33.1 bits (72), Expect = 0.21
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 594 SIEWYPNLPPAEHSYNELPIL 656
           S+EW    PPA H+YNELP +
Sbjct: 67  SLEWVQQSPPALHTYNELPFV 87


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 312 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSTTFFRFSWNTSTIFRLSRLI--YFMKY 479
           + FIY   + FL +KN  F+  YW+   YN F        W T   + + + +    ++Y
Sbjct: 14  VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQRSPNSRWRTQRKWHVVQAMDDSTVEY 73

Query: 480 NFFIRFIYFS 509
             +IR I  S
Sbjct: 74  RVYIRDILTS 83


>SB_41084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 579 LNLPSSIEWYPNLPPAEHSYNELPIL 656
           + LPS +EW    PPA H+Y +LP +
Sbjct: 18  VKLPS-LEWVQQSPPALHTYMKLPFV 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,667
Number of Sequences: 59808
Number of extensions: 217690
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)