Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0922
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote... 42 3e-04
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS... 41 7e-04
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS... 37 0.008
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote... 37 0.011
At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein (H... 36 0.014
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS... 34 0.058
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote... 29 2.2
At1g78910.1 68414.m09199 pseudouridine synthase family protein l... 29 2.2
At5g53070.1 68418.m06593 ribosomal protein L9 family protein con... 27 6.6
At4g13700.1 68417.m02128 serine/threonine protein phosphatase fa... 27 6.6
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 27 6.6
At1g34180.1 68414.m04239 no apical meristem (NAM) family protein... 27 6.6
>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
(HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
(GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
17 (19), 7995 (1989))
Length = 157
Score = 41.9 bits (94), Expect = 3e-04
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +2
Query: 296 DVQHFAPEEISVKXADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 451
D+ EE+ V+ DG I+ + G+ +EEK D+ + R +FTRR+ LPE E
Sbjct: 66 DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125
Query: 452 SVESRLSSDGVLSVIAPR 505
+++ + +GVLSV P+
Sbjct: 126 EIKASM-ENGVLSVTVPK 142
>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
(HSP17.4-CI) identical to 17.4 kDa class I heat shock
protein SP:P19036 from [Arabidopsis thaliana]
Length = 156
Score = 40.7 bits (91), Expect = 7e-04
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 296 DVQHFAPEEISVKXADGYIV-VEGK----HEEKKDQHGYISR---QFTRRYALPEGCTAE 451
DV EE+ V+ DG I+ + G+ +EEK D + R +F RR+ LPE E
Sbjct: 65 DVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVE 124
Query: 452 SVESRLSSDGVLSVIAPR 505
V++ + +GVLSV P+
Sbjct: 125 EVKASM-ENGVLSVTVPK 141
>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
(HSP18.1-CI) identical to 18.2 kDa class I heat shock
protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
contains Pfam profile: PF00011 Hsp20/alpha crystallin
family
Length = 161
Score = 37.1 bits (82), Expect = 0.008
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Frame = +2
Query: 185 PAPL*AENTTARGSPCCRGSR-PWPSIKSDKDKFQVNLDVQHFAPEEISVKXADGYIV-V 358
P+ A +TAR +R W K + D+ EE+ V+ D ++ +
Sbjct: 33 PSSALANASTARDVAAFTNARVDW---KETPEAHVFKADLPGLKKEEVKVEVEDKNVLQI 89
Query: 359 EGK----HEEKKDQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 505
G+ +EEK D+ + R +F RR+ LPE E V++ + +GVL+V+ P+
Sbjct: 90 SGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVPK 144
>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
(HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
crystallin family; identified in Scharf, K-D., et al,
Cell Stress & Chaperones (2001) 6: 225-237.
Length = 153
Score = 36.7 bits (81), Expect = 0.011
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 296 DVQHFAPEEISVKXA-DGYIVVEG-KHEEKKDQHGYISR------QFTRRYALPEGCTAE 451
D+ EE+ V+ D + + G +H EK+D++ R QFTRR+ LPE +
Sbjct: 62 DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121
Query: 452 SVESRLSSDGVLSVIAPR 505
V++ + +GVL+V P+
Sbjct: 122 QVKAAM-ENGVLTVTVPK 138
>At4g10250.1 68417.m01682 22.0 kDa ER small heat shock protein
(HSP22.0-ER) identical to endomembrane-localized small
heat shock protein GI:511795 from [Arabidopsis thaliana]
Length = 195
Score = 36.3 bits (80), Expect = 0.014
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Frame = +2
Query: 170 FSVLQPAPL*AENTTARGSPCCRGSRPWPSIKSDKDKFQVNLDVQHFAPEEISVKXAD-G 346
F +L+ PL E T+ R W K + ++ LD+ +E+ ++ + G
Sbjct: 50 FKILERIPLGLERDTSVALSPARVD--W---KETAEGHEIMLDIPGLKKDEVKIEVEENG 104
Query: 347 YIVVEG---KHEEKK-DQHGYISR---QFTRRYALPEGCTAESVESRLSSDGVLSV 493
+ V G + EEKK DQ + R +F R++ LP+ ESV+++L +GVL++
Sbjct: 105 VLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKL-ENGVLTI 159
>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
(HSP17.8-CI) similar to 17.5 kDa class I heat shock
protein SP:P04793 from [Glycine max]; contains Pfam
PF00011: Hsp20/alpha crystallin family
Length = 157
Score = 34.3 bits (75), Expect = 0.058
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +2
Query: 296 DVQHFAPEEISVKXADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 451
D+ EE+ V+ D ++ + G+ EEK+D + R QF+R++ LPE +
Sbjct: 64 DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123
Query: 452 SVESRLSSDGVLSVIAPR 505
V++ + +GVL+V P+
Sbjct: 124 QVKASM-ENGVLTVTVPK 140
>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 822
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +2
Query: 317 EEISVKXADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSD 478
+EI D Y EG EE+ ++ R + L E C E+VES D
Sbjct: 48 DEIDSAYGDFYEYEEGVPEEESRKNNRYERVVNYEFELAEDCEDENVESEDDDD 101
>At1g78910.1 68414.m09199 pseudouridine synthase family protein low
similarity to SP|P23851 Ribosomal large subunit
pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate
synthase) (Uracil hydrolyase) {Escherichia coli};
contains Pfam profile PF00849: RNA pseudouridylate
synthase
Length = 478
Score = 29.1 bits (62), Expect = 2.2
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -3
Query: 461 TPQIQPYSPPAKRSDE*IDAICNHADLSSPRVCLQPR--CSRPPF*QRFLPGRNAGRPG 291
T I+ YS A I N A L P+ PR S PPF LPG+NAG G
Sbjct: 14 TVLIRRYSRVAPPPSSVIRVTNNVAHLGPPKQGPLPRQLISLPPFPGHPLPGKNAGADG 72
>At5g53070.1 68418.m06593 ribosomal protein L9 family protein
contains similarity to ribosomal protein L9
Length = 221
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = -1
Query: 568 AHGSRFGRSESXVHPPLLAALPGCDYRQHTI*RQPGLHRFSRTALRQSVA 419
+ G+ + + E+ +H PLL A G YR+ + G+ + + VA
Sbjct: 16 SRGTAYHKYENAIHHPLLFACQGVRYRKLEVILTTGIEKLGKAGETVKVA 65
>At4g13700.1 68417.m02128 serine/threonine protein phosphatase
family protein contains Pfam domain PF00149: Ser/Thr
protein phosphatase
Length = 474
Score = 27.5 bits (58), Expect = 6.6
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 218 RGSPCCRGSRPWPSIKSDKDKFQVNLDVQHFAPEEISVKXADGYIVVEGKHEEKKDQHGY 397
+G PC S P I+ + +Q D E ++ K +V+EG HE + G
Sbjct: 240 KGVPCFSCSFPDAPIR---ETYQPRWDAWGRFMEPLTSKVPT--MVIEGNHEIEPQASGI 294
Query: 398 ISRQFTRRYALP 433
+ ++ R+A+P
Sbjct: 295 TFKSYSERFAVP 306
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = -3
Query: 482 HHLKTAGTPQIQPYSPPAKRSDE*IDAICNHADLSSPRVCLQPRCSRP 339
HHL + ++ P S P S + H SS PRCS+P
Sbjct: 26 HHLALSSKARVFPLSLPCNFSSRVSFKLQLHCAASSSSSVSPPRCSKP 73
>At1g34180.1 68414.m04239 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAM-like protein GI:8809651 from (Arabidopsis
thaliana)
Length = 564
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 356 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSDGVLSVIAPR 505
+E E D G RQF +P+G +AE ++S L ++ I PR
Sbjct: 229 IEKLLNEIPDAPGVNQRQFDEFVGVPQGNSAEVIQSTLLNNSSGEYIDPR 278
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,238
Number of Sequences: 28952
Number of extensions: 258751
Number of successful extensions: 663
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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