Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0921
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 30 0.26
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 30 0.35
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 28 1.1
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 27 3.2
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 27 3.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 3.2
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.6
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 5.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 5.6
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 5.6
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 26 5.6
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom... 25 7.5
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 25 9.9
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 25 9.9
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 9.9
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom... 25 9.9
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 246 RDPEFNDDYHEAEESIEPTNHEISKNTRQATLEIYLQKIKKSNMEKNMRIEQEVRNS 416
R P+ YH+ SIE + I N Q+ Y+++ S+ E N + ++NS
Sbjct: 32 RAPKSKTTYHKPPSSIESVSTLIQPNKSQSVTSPYVKQFTFSSKEYNSHNKHALQNS 88
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 29.9 bits (64), Expect = 0.35
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 297 PTNHEISKNTRQATLEIY-LQKIKKSNMEKNMRIEQEVRNSLKAMKQCKQNVNIFKVPAK 473
P + ++N R T+ + + +KK ++E+ R + +L+ + +Q VN++K P K
Sbjct: 403 PQTKKKNRNWRLKTIGMQKAEDVKKQDIERQERDYELFLQNLEEDPELRQGVNLYKAPVK 462
Query: 474 PL 479
+
Sbjct: 463 AI 464
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 481 NNGLAGTLKIFTFCLHCFMAL 419
NNGL T+K+ F + CFM+L
Sbjct: 1504 NNGLYPTIKVDDFLIDCFMSL 1524
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 410 SNFLFYSHVFLHVAFLYFLQIYF*GCLTSIFR 315
S + + H+FL+VA YF+ + C T FR
Sbjct: 183 SALICFKHIFLYVAPAYFVYLLRVYCFTPNFR 214
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 117 P*CLPCSSVRIPSRPLSTRISCPICHTC 34
P C C S+ + ++ C +CHTC
Sbjct: 114 PKCFECDSIELDTKYFDI-FHCRVCHTC 140
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Frame = +3
Query: 273 HEAEESIEPTNHEISKNT-----RQATLEIYLQKI-----KKSNMEKNMRIEQEVRNSLK 422
H+ E+ IE N EIS ++ LE +Q+ K +++E IEQEV +SLK
Sbjct: 126 HQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLK 185
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 26.2 bits (55), Expect = 4.3
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = +3
Query: 309 EISKNTRQATLEIYLQKIKKSN----MEKNMRIEQEVRNSLKAMKQCKQNVNIFKVP 467
++++ Q E+Y KSN MEK + + + N ++ C Q N FK+P
Sbjct: 395 QLTRIVGQVLKELYSVSGMKSNSSQVMEKILEFDLLLNNWYNSLPDCMQPRNRFKIP 451
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.8 bits (54), Expect = 5.6
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +2
Query: 53 QEILVLRGLDGILTELQGRHYGKHLV 130
Q+ L+LR + ++ ++Q +G+H++
Sbjct: 746 QKFLILRSISHVIPKIQNTRHGRHIL 771
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 267 DYHEAEESIEPTNHEISKNTRQATLEIYLQKIKKSNMEKNMRIEQ 401
DY A E + P + SKN +E+ LQK +K +N+ E+
Sbjct: 83 DYRSANEKLRPYSKYASKN-----IELKLQKKEKEEELRNLEEEK 122
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 5.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 644 NLLVSPTKRSWVDNLFGGLNSNPP 573
N++ PT+ W+DN G + P
Sbjct: 554 NMVYDPTRLRWIDNSISGQEAEDP 577
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 88 SHRTTRKTLRQTFGKDFTPRKSLRALVMEKSAKRQTALVDAKE 216
S TT TLR+ F + L + ++++ ++ +L DAK+
Sbjct: 5 SFSTTLDTLRRRFNDSSSEEDKLEKNIQDETSIKEVSLQDAKQ 47
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 134 ISHLENLYER**WKSPLRDRLHLLMPK-KFLK 226
IS L NL+ WKSPL + LH P FLK
Sbjct: 286 ISWLLNLFVLGSWKSPLLNALHYPFPSVGFLK 317
>SPBC29A3.08 |pof4||elongin-A, F-box protein
Pof4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +3
Query: 345 IYLQKIKKSNMEKNMRIEQEVRNSLKAMKQCKQNVNIFKVPAKPLFARHSTKP 503
+Y + KK N N+ ++R++ ++Q KQN I + +P AR +P
Sbjct: 87 LYGKLKKKRNAHYNVA-SAKLRSAYTKLEQSKQNKRIVPLEREPRAARPPKRP 138
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 9.9
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 288 SIEPTNHEISKNTRQATL----EIYLQKIKKSNMEKNMRIEQEVR--NSLKAMKQCKQNV 449
S+E + + KNT+ L ++Y + S +E N R+++ V NSLKA+K QNV
Sbjct: 253 SLENFLYMLLKNTKNLALVAGKDLYFG-VGGSILEFNSRLQKLVDDPNSLKAIKTSTQNV 311
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +3
Query: 279 AEESIEPTNHEISKNTRQATLEIYLQKIKKSNMEKNMRIEQEVRNSLKAMKQCKQNVNI 455
A ++++ N E+ TR T I + ++EK + ++R S K+ + VN+
Sbjct: 124 ANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVNL 182
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = -1
Query: 530 FLSLYFCLNWFCGMSCK*WLGRDFENIYILFALFHGFKGVSNFLFYSHVFLHVAF 366
F S++ W+C K + R + +I+ ++ F +S F+ H+F+ F
Sbjct: 675 FTSVFAGALWWCLHQPKRMMDRSVKTFWIMSSISLTFLCISCFIMRHHLFVWSVF 729
>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 359 FLQIYF*GCLTSIFRYFM 306
+LQ+ F C+ SIF YF+
Sbjct: 122 YLQLMFNACVASIFLYFL 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,686,299
Number of Sequences: 5004
Number of extensions: 54223
Number of successful extensions: 197
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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