Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0918
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    27   2.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   2.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    26   6.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   8.7  

>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 223 QLHMTTGTRECLTSIRKANHFFCIFKDASLIF 318
           + H TTGT     SI++  H++ +F+ A   F
Sbjct: 630 ETHDTTGTSNFAVSIQQEKHYYPVFQPAPTEF 661


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = +1

Query: 379  LARVRPP-PADSVVLPAATDAVATRDASPPPPVATATRERGPA 504
            +A VR P P  S   PAA    ++    PPPP   +     PA
Sbjct: 880  MAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPA 922


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 394 PPPADSVVLPAATDAVATRDASP-PPPVATATRERGPA 504
           PPP+ S     AT A +   A+P P P A+  R  G A
Sbjct: 62  PPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAA 99


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 394 PPPADSVVLPAATDAVATRDASPPPPVATATRERGPAARCCCWSGTPP 537
           PPP+  V   AA  A   +   PPPP +   R + P       S  PP
Sbjct: 293 PPPSSRV--SAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPP 338


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 433 DAVATRDASPPPPVATATRE 492
           D +A  +A+PPPP+A A  +
Sbjct: 212 DDIANNNAAPPPPLAQAQEQ 231


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 99  CGNAQLGYVLCSRVLTEVGLQRR*CRSIIKL*I*FKNNTRASIAY 233
           C N+   +VLC ++   +G Q +   S +++   ++ NT + IA+
Sbjct: 708 CSNSLFYFVLCMQLEESIGTQEQRLLSFLRV---YEKNTLSEIAH 749


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,709,642
Number of Sequences: 5004
Number of extensions: 50078
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)